XLOC_007663


Basic Information

Item Value
gene id XLOC_007663
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 4287253 ~ 4287995 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016025
ttatttatacatatatacgcctttttttaggtgagggaatggaagttttgggTGAGTTCcgccacttttttccctaggacttcaataagtcaaagtacaggtctagacttaatgatgatcatcttcaagccatactgagggtctcaactgcttccgctctaaagccaaatgtggttcagatttgtgagaagaagcgctgtctagtctctggcagcaagaagtaggcaaaagatgccatgttcggaagaactgttcataatcttcactcaatgttttattaatgttcaggacacttcatgttcagaagaaataattaaaactgttaataatgacatttgaggacttttttttgtgaaatcccttatgcggcccagcctcacccagactttgcctcctgcggcccccaggtaaattgagtttgagacccctgatataaagtctgcagtggaaacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgcaatgactcaaatcacttatcatctaaaatggcaaagaaagtgttcaatgccttctccatcttaccccagacatgcttaataatgtttcggttatttttttttaatcggttatttattttttttataataataataatattttttgttatttaactgATACCAATTATCTGTTAAAATCGCACCCTTTGGTTAACGGTGAATCGgttctaaaaaaaattttaaacggtaaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016025 True 743 lncRNA 0.37 1 4287253 4287995

Neighbor

gene id symbol gene type direction distance location
XLOC_007662 frmpd1b coding downstream 13857 4191136 ~ 4273396 (-)
XLOC_007661 si:dkey-185e18.7 coding downstream 109942 4163773 ~ 4177311 (-)
XLOC_007660 BX088718.2 coding downstream 123832 4160855 ~ 4163421 (-)
XLOC_007659 casp3b coding downstream 141659 4125363 ~ 4145594 (-)
XLOC_007658 irf2 coding downstream 166201 4084120 ~ 4121052 (-)
XLOC_007664 guf1 coding upstream 7938 4295933 ~ 4321874 (-)
XLOC_007665 LO018287.1 coding upstream 190421 4478416 ~ 4556911 (-)
XLOC_007666 NA coding upstream 308508 4596503 ~ 4599936 (-)
XLOC_007667 NA coding upstream 316392 4604387 ~ 4607757 (-)
XLOC_007668 gabra4 coding upstream 322444 4610439 ~ 4682114 (-)
XLOC_007641 CU855896.1 misc downstream 1879413 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 1879822 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 1880181 2406945 ~ 2407072 (-)
XLOC_007654 NA non-coding downstream 905950 3362794 ~ 3381303 (-)
XLOC_007653 CABZ01073834.1 non-coding downstream 928199 3325867 ~ 3359054 (-)
XLOC_007646 NA non-coding downstream 1433998 2851570 ~ 2853255 (-)
XLOC_007642 NA non-coding downstream 1766356 2511851 ~ 2520897 (-)
XLOC_007669 LO018256.1 non-coding upstream 404754 4692749 ~ 4707172 (-)
XLOC_007670 NA non-coding upstream 508753 4796748 ~ 4797259 (-)
XLOC_007671 NA non-coding upstream 544683 4832678 ~ 4844445 (-)

Expression


Co-expression Network