RNA id: TCONS_00015108


Basic Information

Item Value
RNA id TCONS_00015108
length 375
RNA type unprocessed_pseudogene
GC content 0.50
exon number 1
gene id XLOC_007711
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 8383549 ~ 8383923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCAGGCTGAAATGGACCAAGCAGATATGGAAGATgttgaagaggaggaggaagacgCTGAGGAAGACAACAGTAAAGCACGTCAGCTGACGCGGCAGATGATGCAGAATCCTCAGATTCTGGCGGCGCTGCAGGAGAGGCTGGATGGACTCGTAGGATCTCCCTCAGGATACATGGAGAGTTTACCGAAGGTGGTGAAAAGACGTGTTAATGCACTTAAGAACCTCCAGGTCAAATGTGACCATATCGAAGCTAAATTCTATGAAGAAGTCCACGAGCTGGAGCGAAAATATGCAGCTCTTTATCAGCCTCTGTTCGACAAGCGGAGTGAGATTGTGAGAGCGGCGTACGAACCCACAGATGAAGAGTGTGAg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016360 lncRNA downstream 100350 8245582 ~ 8283199 (-) True XLOC_007709
TCONS_00016359 lncRNA downstream 416070 7963276 ~ 7967479 (-) True XLOC_007707
TCONS_00015101 lncRNA downstream 639396 7741184 ~ 7744153 (-) True XLOC_007704
TCONS_00015100 lncRNA downstream 639486 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00016358 lncRNA downstream 850411 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00015110 lncRNA upstream 66918 8450841 ~ 8453192 (-) False XLOC_007712
TCONS_00015109 lncRNA upstream 66918 8450841 ~ 8453549 (-) False XLOC_007712
TCONS_00015113 lncRNA upstream 66918 8450841 ~ 8453761 (-) False XLOC_007712
TCONS_00015112 lncRNA upstream 66918 8450841 ~ 8456599 (-) False XLOC_007712
TCONS_00016361 lncRNA upstream 640402 9024325 ~ 9028962 (-) True XLOC_007720
TCONS_00015107 mRNA downstream 111863 8261417 ~ 8271686 (-) True XLOC_007710
TCONS_00015106 mRNA downstream 303133 8043441 ~ 8080416 (-) True XLOC_007708
TCONS_00015105 mRNA downstream 494801 7824411 ~ 7888748 (-) True XLOC_007706
TCONS_00015104 mRNA downstream 497842 7789093 ~ 7885707 (-) False XLOC_007706
TCONS_00015102 mRNA downstream 596964 7764331 ~ 7786585 (-) False XLOC_007705
TCONS_00015111 mRNA upstream 66922 8450845 ~ 8456679 (-) True XLOC_007712
TCONS_00015114 mRNA upstream 235203 8619126 ~ 8625845 (-) True XLOC_007713
TCONS_00015115 mRNA upstream 338229 8722152 ~ 8724290 (-) True XLOC_007714
TCONS_00015116 mRNA upstream 386229 8770152 ~ 8795081 (-) False XLOC_007715
TCONS_00015117 mRNA upstream 397647 8781570 ~ 8787525 (-) True XLOC_007715
TCONS_00015098 other downstream 1021684 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015086 other downstream 1404219 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015075 other downstream 2120244 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 2196716 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 5311911 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015150 other upstream 2294470 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 2923291 11307214 ~ 11310767 (-) True XLOC_007744
TCONS_00015153 other upstream 2933147 11317070 ~ 11331910 (-) True XLOC_007745
TCONS_00015154 other upstream 2954452 11338375 ~ 11363493 (-) True XLOC_007746
TCONS_00015155 other upstream 2982772 11366695 ~ 11374026 (-) True XLOC_007747

Expression Profile

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