RNA id: TCONS_00015113


Basic Information

Item Value
RNA id TCONS_00015113
length 1152
lncRNA type sense_over
GC content 0.37
exon number 4
gene id XLOC_007712
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 8450841 ~ 8456679 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTTGCAAAACCTTAGATCACCATAAACTTTGGTTAATTTATgtacttttctatttttattattactctgTATTTTCATGTCttctttttgattttgattttcattaTGTGCTGTGATGTTAAGAAATTTGTTGGTTGTAAGCTGTGGTCATTgttctgttctttttttgttttgttaaaataaaggcaaaaaaaataaaaaattaacaagtcATATTGTTTTTACTGttagttattaaattaattttaaaacccccccaaaaaattaagttattttctcATATATCCTCAAACGTCAGACTTCAAACTACAAGTTTTGTCTTCAAAATTTGTTTTCCAGAAAGCACTTTCAACTCGTGTTTTTTTTCAGGTGACAGATTTTTCAGAGGTATATATCCACCATGTCAAAGGCAACCAAACGCAAGCACGTAGTCAAAGAAGTACTGGAGGATTATGTCACACCCACTGAAGACCAGCAGATCATGAGGGTCTTGGGAAGTAATGGCAATAACCTCCATGAAGCTGTGACTGGCAGTGGCGAGCGTTTTCTCCTCAGTATGCCTACTAAGTTCCGCAAGAACATCTGGATCAAACGAGGAGACTTTGTCATTGTTGATCCCATTAAAGAAGGAGGAAAGGTAAAAGGAGAAATTAGCTTCATACTTTACAGGGACCATATTCAGCACCTGAGGAAACTTGGTGTCTGGCCAGAAGGATTCCAGGAGGATCGCACATCCGGTGAGAGAAACGAGGGAACACCGAAAGAAAGAAGTGAAgaaaaagaagaggaggagggtGACAGCGAATCTGAGGACGATGACAGCGATCTGTTTGTGAACACCAATCGTGCCACTGTTCTTTACAGTGAGAGTGAGGAAGAAACCGATGAAGATGAGGAAGAAGATAAAGGAAGAGCATAAATCTACAAATGATACCACAACATGACCAAGAACAGCTTTCTGTGGTGAGAAACCTAGGTTAGAAACTTGGAAAAACCCATTTATGCCTGATTTCAAAATGTCAAGAGTTCTCTTGCATGGCTTTGAGAAGGTGTTCAAAACGTTTTGTTTGAGTTAAAGGAAACTTGATTATGTATATGTATCATAATTATTGTAAATAAGGAGTTGTAATAAATTCTCTTTCGTATGCT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0031099 regeneration biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016360 lncRNA downstream 167642 8245582 ~ 8283199 (-) True XLOC_007709
TCONS_00016359 lncRNA downstream 483362 7963276 ~ 7967479 (-) True XLOC_007707
TCONS_00015101 lncRNA downstream 706688 7741184 ~ 7744153 (-) True XLOC_007704
TCONS_00015100 lncRNA downstream 706778 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00016358 lncRNA downstream 917703 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00016361 lncRNA upstream 570564 9024325 ~ 9028962 (-) True XLOC_007720
TCONS_00016362 lncRNA upstream 1115149 9568910 ~ 9570304 (-) True XLOC_007730
TCONS_00016363 lncRNA upstream 1117982 9571743 ~ 9581138 (-) True XLOC_007731
TCONS_00016364 lncRNA upstream 1884658 10338419 ~ 10441028 (-) True XLOC_007735
TCONS_00016365 lncRNA upstream 2014476 10468237 ~ 10469588 (-) True XLOC_007737
TCONS_00015107 mRNA downstream 179155 8261417 ~ 8271686 (-) True XLOC_007710
TCONS_00015106 mRNA downstream 370425 8043441 ~ 8080416 (-) True XLOC_007708
TCONS_00015105 mRNA downstream 562093 7824411 ~ 7888748 (-) True XLOC_007706
TCONS_00015104 mRNA downstream 565134 7789093 ~ 7885707 (-) False XLOC_007706
TCONS_00015103 mRNA downstream 664581 7764375 ~ 7786260 (-) True XLOC_007705
TCONS_00015114 mRNA upstream 165365 8619126 ~ 8625845 (-) True XLOC_007713
TCONS_00015115 mRNA upstream 268391 8722152 ~ 8724290 (-) True XLOC_007714
TCONS_00015116 mRNA upstream 316391 8770152 ~ 8795081 (-) False XLOC_007715
TCONS_00015117 mRNA upstream 327809 8781570 ~ 8787525 (-) True XLOC_007715
TCONS_00015118 mRNA upstream 352466 8806227 ~ 8814590 (-) True XLOC_007716
TCONS_00015108 other downstream 66918 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015098 other downstream 1088976 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015086 other downstream 1471511 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015075 other downstream 2187536 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 2264008 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015150 other upstream 2224632 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 2853453 11307214 ~ 11310767 (-) True XLOC_007744
TCONS_00015153 other upstream 2863309 11317070 ~ 11331910 (-) True XLOC_007745
TCONS_00015154 other upstream 2884614 11338375 ~ 11363493 (-) True XLOC_007746
TCONS_00015155 other upstream 2912934 11366695 ~ 11374026 (-) True XLOC_007747

Expression Profile

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