XLOC_007710 (purab)


Basic Information

Item Value
gene id XLOC_007710
gene name purab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 8261417 ~ 8271686 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015107
GTATTGAAAGCTTTATTAGTTATTGTATCATGTTAAAAAACAGAAATGGTTTCAATCCTGAATCAACTGTTGCACTCTACTGCTTGCAAAGACTGCTCTGAGCTGGAATATTTGTAATGACATAACTTGTGCTTCATAATGTCGTGTATTGTGACTCAGTCAGAACATTTTTGCTCGTTTCAAATGCTCTTTTCTGCTTCCCGGACCCAATCTGACCGCTATGCAGAGGTTCTCGAAAGGCTGCAGAGTCTATGCTCTACTCCTTCAGCAGCGTCTCTGTCTGCGGATCTCGCGATAGTTCGGCGTTCGCTGAGCAGCAGTCGCTTTTGCAGCAGGGCTGAgggagacggagagagagagagaaggtaaGCGGGGAGGCTGCATCATGGCGGACAGAGACAGTGGAAGCGAGCACGGTGGATTCGCCACAGGCCCCGGCGCCGGCCCGATGCACCCGGGCGCTGCATCGCGGCTCCAGCACGACACGGAGGAGCTCGCGTCGAAGCGCGTGGACATTCAGAACAAGCGCTTTTATCTGGACGTCAAGCAGAACGCCAAAGGCCGCTTTCTGAAGATAGCAGAGGTCGGGGCCGGTGGAAACAAGAGCCGCCTGACTCTCTCCATGTCTGTCGCCGTTGAGTTTCGCGACTACCTGGGAGACTTCATCGAGCATTACGCCCAGCTGGGCCCCAGCAACCCTGACTTGGTGCAGGACGAACCCAGGAGGGCGCTTAAGAGCGAGTTCCTGGTGCGCGAGAATCGGAAGTACTACATGGATCTGAAGGAGAACCAGAGGGGGCGGTTTCTCCGGATCCGGCAGACCGTCAACCGCGGCCCCGGCCTGGGAACCTCGCAAGGCCAGACCATCGCTCTTCCGGCGCAGGGGCTTATCGAGTTCCGCGACGCGCTGGCCAAACTCATCGACGACTTCGGCGTGGACGAGGATCCAGCGGAGCTGCCCGAGGGCACTTCGTTGACGGTGGACAACAAGCGCTTCTTCTTCGACGTCGGCTCCAACAAGTACGGCGTCTTCATGCGGGTGAGCGAGGTGAAGCCAACCTACCGCAACTCCATCACGGTGCCCTGCAAAGTGTGGTCCAAATTCGGCGCGACCTTCTGCAAGTACGCGGACGAGATGAAGAAGATCCAGGAGCGGAGCCGAGAGCGGAGGGCGCGCGAGATGCTGCCGGAGGGCCTGCACGGCGACGACGGGGACGAGGACTAATGCAAAGCGCGTAAATACATGTACGTATGTACGCCCAGAGTGACATGATAATCAAACGTTACTGTACTGTAATGTGGGATTGCTCTACACACACAACCCTCACAGACTCGAACAGTTGCATCTCTTCACTCATCGCCGGAAGTTACCCACTTACCCACCATTTAACAGTAAGACGCTGCTATCGACAACATGATGTATGAACCGTGTCCAGGATggtgcaggagtgtgtgtgtgtgcgtgtccctTTTTACCCACGTGTGTGACACATCCAAGCGCTTATGCACTGCAAAAATCCTCTTGTTTTCCAGTACAGATCGATCCATTTAATAGTTTGCTTCTAGTTTATATATGCGCGTGTTTATTGTTTgaagaaaaagttttatttacacCACACATTTCACACGGCGAAGAATGTCATTACCAGAAATATAAGATAAAGACACTTTATGTAAAGAAAAAAGAGCGTTCACACATGAGTGGGGTCAGTTGTGATGCGATTCCACACACTTCAGCACTGACGCCTGTCAGTCATGTTGCCAACTCGACACTGATCACGTTTTATGTAAAAGGAAACTGATTCTGCagattttaaaatgtgctttcgTAGTAAAAGTGACATGAAAATGCTGCTGATATTCAGTATGCAAACTGGGGATTAGAACGAGCAACTGACCCCGCTCCAAACCTTCCTTGTAGAAATTTTGGCTCGTCATTCATGTTGTTTGCAAAAGTATGTGCGCTTTACTGgaaaacaagttattttttttgcagtgtaacacTATTTCCAAAGGTGCAAATTGAAAAAGAGgaagaaatatattaataattagtgCTCACTTTTGACTTCCAGCACAAAAGCTATTATTTAGGAACCGTTTGAACCGTTTAAAAGGTTCAACATGCAAACAAACATCAGAAATGGTGGTACAGTGATGAGTGAGTGCTGTGTATAGTTCAACACGCACTCTTGTCAGACTATTCAATCTCTATAATGGATGTCACCCCTTCTGGTTTGACTTAAAGATGCACTCGGTTATttctagtttctttttttttttgcgctggTTGTACCATGTTGAGCTCACATCACCAGCCAAGATCAGTGTTTTTGATCACTTTCAAATGCAGAATGCGTCAAGTCTAACATTaatggggacctattatgcaaaaatcacatttataaagcatttaaacacagttgtgtggcaagtgtgtgtaaatatagtcagcctctaatagtaaaaattaattacttttttactttttttttttttttttacaatcacacttcataaaaacagtctccagaaacactttgattttgTCCCTCTGTACATGTCAtaagagggggaaagccccgcctatAGTCAATTGTAGCCCCGCCCTTCAGCTGGGAGAACAATCAGTTAAATTTAAAGCAGCAGccaccaaaacggcacaatttggTTCATTTAAAGCCTAAAATAGGCAAATTCTAAGAGTTGTAAACATGATCTGTGGGGTATTTAGAGCTGAAACCTCTCAAACACACTGTAGAGACATCATAGACTTGTTTTACGTCTTtaataataggtcctctttaactAAAAATGAACGAGTGCACCTTTAATTGCATACGATGGAAGCTAGATGTGTTGTTTACTCGTTTGCCTTTTAACTCTATAGACAAAGCAAATGAGATTGTTTGTTTGCACGCGTCATGCAATGTGTGCTTCGGTAGCCGCACAGCGAAGGCATTGCTAAAATCTACGACTGGTTGACGTTTGTTCCTGTTAAATACGAACCCTGTCGCACCATGCCCACTGACATTTGGGCAGACGGTTTCATTGAAGTGCTAACTTAGATATACAAACTATGATTTTGTGAATCAGATGTACTTAGATCCTTATGAAATTGCCCACGTTTTCTGTGggaatttttctttgttttgtttttggggaCGGGGTGGGAGGGGCGGGGggtacttaaaaaagaaaaagaaaaaaaaaaaggagctgTCCACTAGTGTGAGTTGCGTTAATACCTGCGCGGAGCATCCTCTACAACGTCAAAAAAACAACTCTGGTGCCTTATATTCTCCACACGTTTACATGCTTTACGTGTCCGATCATTTTCTTTCTGATCGCTGTTTGTCTTTCTTTGTCGTTCGGGGGCGTTCAACGGCGTTTCTTCGATGACTTCTTTAAAAAGCCAATCAAAGAAAGAGGCGCGCGAGGGTTCTCGGGTTCGCCGAGAAAAGAACGATGATGTCATAATCAAACAGCACTGACGTAAACATGGACGTGCTGCGTTTACGTCATGTCGGAGTTAGTTACATTCTGAAAATTATTTTCATGGTAAAGCTAACCTCatcttctcaaaaaaaaaaaactaatttaatttaggATTTAGCGAATTATCAATGATCTCGTTTGCAAAAAAGGATATAATAAAACTTAAATTTTCAACAAGGTATACCAAAACATTTCAACGAGATTCTATTAATATGATTTAGTAATATAGCTACATTGTGATTTTCGTTATTAATCATagccttcttttttttaaaaaaaaaagtactattcCGACATGACATGAAAGCAGCAGTAGTCACCAAAAGGCGATGGAGGTCTGCTCCTCGTGCTCCTTACGAAATTTTCAAAATAActgcttaaaaacaaacaaacagctgtGTGTAAAATAAACAGCGTGATAAGGTTGTACGTATGTTTATCGCTACAGCCCAGCGTTATGCTAATGTAGGCCTATATTAGTAGACTTACGGCCGAGGCAGTAGCCTGTATAAATTAGTTTTTGTATGGTGCTAATATCCCCGTTTGTGGGAGTTTCTTCTGCCGGTCTTACTTATCAGTTGCTGAATTGGTTTTGTTGTCAACCTCGTCACATTGCACCTTGAGATTTTACTTTTCTCACCAATGTTACAGTGCTAACATTTCAGTATCGTGTGCAATATATTGTAGACTGCGTGTCAATGGTGGCGTTGTGCTAAATTCAGTCACCCTGCGGATTCGTGTGCACCTTTGGACCCCCAAAGTGAAGCTATTAGCTAATGCCTGAGTGAAaatgatttatgatttttattacatatatttaaacatgACATGACTTGTCGACATattggaaacattcattcatttcttttccttcggcttagtcacaaATAAAagtatcaggggtcgccacagcagaatgaaccaccaactattcctgcatatgttttacgcagcgaatacccttccagccacaacccagtactaggaaacactcatacattcacactcatactctaaggccaatatcattcattcattcattttatttacggcttagtccctttattttatcaggggtccccacagcggaatgaaccaacaactactgcagcatatgttttacgcagcgaatacccttccagattaacccagtactggaaaacacccatacaccctcactttcacactcatacactaaggccaatttaaatatttcattcatttttttcggctaagtccctttatttacagggttcgccacagcggattgaaccacaaactattccagcatatgttttacgcagtgaatatccttccagccgcaacccagtactgggaaacacccatagactctcacattcacactaaggtcaacttcattcattcattcattcattttcttttcggcttagtctctttgtttatcagggatcgccacagtggaatgaaccactaacttatccagcacgttttacgcagtgggtgcccttccagccataacccaacactgggaaacacccatattatctagcacacactcacatacactacggccaatttaatgaATCCAATTCACCTGGAGCGCATGTCTTAAGACTGTgagggagcacccggaggaaacccatgcaaacacgggagaacatgcaaactccacacagaaatgccaactggcccagctgggactcgaaccagcgcccttcttgctgtaaggtgacagtgctaaccactgaggcaccatGCAACTTATTGGAAGCATTTTACTCAAAATAATTACCTTTATAAAGCTGCTTGTGTGGGTCTGAAGATAAAAATATCCCACAGAGTGACTGAATATTACCCAACGTCGTCATTCTGTGTGTGTGGAAACCCCTGCAATGACGATAAAAAAATGTATGCGCGGGTCTCGCTCTATTCAAAACATTTCTATGcgtattaaacaaacatttttgacCGTCACAAAATCTAGTAAAGAACTGGTCGCCTCAAACAGGGACTGTCTGACAGAAGCACCTGCACACATGGCGGCAATTCTGCTCTCTCCGCCAGTCAGGCGCCATCCCTGCTGTTCGACCTAAAAATATGGTGACAACCTAGTCACTTAAAAAGCTTCTCAATGGTTGTAGTAGTTAAATACTCGGTTGctaatatatatgtattgttttttaaagccAATATTAAATGCAAAACACTTCTATCAGAGGTGTTCATTATACTATTTATTTGATCGaatatttgaagaatgttgcccAACTCACTAATGTTTCTGAAAAAGCCTGTTGCTGTCAGACCCAGACATCATAAATTCTCAAGACATCAAAAACAAGATTTTTGTATCTAGTAAAGCCACCAGCCTAAAGTCAGTTTGGGGGTTTCTAGGCCCATTTCGTGCTAAGCACATGAGAAAGTCTATAGGGATCAAGGTCTGACATTATTCCCGCGGAGTGTTTGGTCTCTTGTTTACCACTGCACAATATTAAAGCATACATAGGCACTTTGTCCCGCTCGATATTTCCTTGCATCTCTTCGAGAATAAATCTGAAACGCCATGCTTCTCTTGTAGGGGCTATTTTAGGTTTATTTGTACACTGTTAttgttcttttttcctctgaGACCGGTAAGCAAATCTTTTTCCTATCACTGCCCAGATCCGATTACGAAAACTGTTCAACGCGTGCCAGAGTATCTAGAGATATCAAAACTGGAAATTAACAAGGGTGACTTCTGGAGCGAAAACGATGCAAAAAGACGCCCTCGAAAACCAGATTTTGCTCTCAGATAAAGCCctcgttcaaaaaaaaaaaaaaaaatgcacatgttTTAAGTCAATCGTGAAGGTGCTATTGGGTACTAATCCTGTCCGCATGGCAGCGTTCAGCCAAGACTTTCTCGTCACGTTCGTCTAATAGTGTTCAAGCTCTCCACCAGCAAAGACCAGTGTTGGTTTGATGCACAACAAGCTGTGGGGGCAAAAGATAAGACGGTACTCTGACTCTATTCTCCAATTCGAGGTGCTGAATCAAACGTCCTTAATGAGCAGAACGTGTGTATCATTGAAGTAGTGGAGCTGCACAGACACCTTAAAGgagcagttcacccaaaaatgtaaattctgccataTTTTACTCGCCCTCAGGCCATCTTTAGTGTATTTGAATTTGTTGTCAGTCAGAGGAACACAGTTAGAGTAATCttaaaatttaaacataatagttttggtcagaggcttttattttattatgacgGGCTTAACGCATATCTTATGAAGcagatttttatatacattttttaaatgataatctCCAATTAGTGATATCTTTGGTGACCGAATACATGTTATGTGTGACTGACGTAAACGATGTAAGAAGCAAGATGCATTTGTAGTGAAAGATACCACACagtttgtttacagaagatgacAACGATTAagacatttcaaataactgatttcttttatctttgtcatgatgacagtaaataatatttgactagatattttagtATAGTAgatataagacacttctatacagcttaaagtgacatttaaagacttaactaggttaattaggttaactaggcaggttagcataattaggcaagttagtgtataacgatggtttgttctgaaaaaatgaaaaaaaaaatgtttaaaggggctgaaaattttgtccctaaaaaataaaacctttttttgttctagctgaaataaaaaaaattagattttctccaggagaaaaaaatattagggctaataattctgacttcaactaactgtgtgtatatatatatatatatatatatattagggctgcacgatattggaaagtTCTAAcgtgatattatttttttctctgcgATTATAAAAAATTGCGATAAGAATAttatttcaccagatggcttaaATAGCATTTGGTAAGTCATTCATTTAGATGAATTGGGATTGTTTTGTAGGGAGTTAATCATGTATTGgtctatatattattaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactacagaaagattaaagtaaaacaaacatcactttatggttttctggggactCTAGCGGTGTTTAGGTAGATATattgaaaaattaaatgtaaattaacactgccttattctttattaaaatgataaataatatgaTTTCTTGTGCCTGAATTCTTTAAACACTATGAAAATgctcacagtcacaggccttaaaaacccATACAAATGACAAACTTTCACTTACTGGTTCAGTtctgcagtgactccacaaatcgTATGTGTTTTGACCTGCGATTTCTAGTATAATGaactataaaaaaaactgtaatgctaacttaacattgcatatctttgcgatagggctgtgtgattaatcgaaATTAAATCGCAATCTGAAAGGTTACGATTATTTTATCGCTAAAGGCAACAAtatgaaatgtatatattatttaatttaccccacccagagcaaatgcgtgactgccgtctgtgtgtgacaatAATATccagaaaacaaacaggaaagcgctgACAAGTGGGATTATGGCGTCTGCTCCTTCAGAAGCAGCAATTGAAAAATTAGTCAAAGAGAAACCGCATTTGTAAAATAGGAagattttggttttaaagtcacagacacctgtctgtcgcagaattgttgccatggcttacagattattgagctagagcctgactacaaaattaaatcgtgAATCAAATTGCAAtcgcaatataaaaaaaattgcaattagatattttcccaaaatcgcacagccctataaaatgatatattgtgcagccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacatataaaataaattgcagTGTATTATTCATCTTATGCCATACGTTGAGTAGGTCAGTCACAAATAAAGGCTGAATTACACTTATGTGTTCGCCATAAAGTTTAGTTGtgcgtttatacttctgcgttctgtttgtgttgctcagacagtaacacttccgaaacgctagctgacaGCAGGGTTTCTATGTTCCTTACTGCTGAGTTTCttcttgtgtgttttgtttacaaTAGAAACCTGTAATGCTAACTTACTTACAgttagctcaaactcgctcattccgAGGTGGGAACTGGAGGACGTGCAACAcctttaatcataaaataaacacaaaacaaaaatctccAACCCTTGTTCgtggctctctgtcccgcccacatttgtcagtgctaccaagccaaccaatcacagagcttgcatcTTCACGATATGTAGTTAAAATTTTTAGAGAGGTTCGTGTTAGCATCAGGCACGGCGAAGGGTATGTGATTGTGCGGACACCGTGCCAGACCATCCATGTACGCTCgacacaataaaatatattaaacatatattttacaaaaattgtttacaaataaaaatttttttaatatttaaaaaaaaatgttaatttaattgataaattagttttcatttttgggtgaactattcctttaaagccATCGAATCTGCAGTTTCTAGTAAAGCGAAGAGCGAACCTTTTAACTTGATCTCCATgaagcgtatgtgtgtgtgtgcgtgcgtgcgtgcgtacgtGTGTGATTCTACGGTTCCCCTTCCCTGTTAAACCACGGCCAGTCACAAACTTGGGTTAGTTCTCATACTTCACAGTCCCTCGGTCTCACAAGCTCAAGGCTTTGACCAGCTTAGCATGTAACTGTGAGCGTTTAGCGCATTAAGCGGACTGTCTGGGAGGGGTCCTGCATCGAGGGTCAATGCACAAGGAGGGTATTCACATATCCCACCAACCATTTCCTTTTTATTCCCTATCAAATGTGttgtacttaaaaatatatatatgacctgtgatgtgtgtgtatatatggttTGTTACATATGATGCtcctctttattaaaaaaaatagcaaatatatatatatatatatataaataaatatgtatatgattCCTATATGTGTGTTCCTCTGTGCATAGGAAATACATACAGGACGAAAAgcatattgctgtttttttttcctttgtattTTATACTTACAGAAAGCATTGAATCAAATGGATAAAATACTTgcactttaaatatataaagaaaataaaaaaatcagcatATTATTTTTGATAGGTGACCTCACGTTCAAAGATTCTATAATTCCTTTCCAGGCTTTGTGACAATTGCTGTTTGGCAGAAATCTATGAAGTTCTTCTACATATTGAAGTCTATTTTGTCTGTGTTACAGAAGGTTTACTAAAGTAAATTGCATGACGACTAAGTAGTGCACCAACTGTTATTTTCTTTAGTTGGTTAAAAAtgtctaatgaaaaaaaaaaaatactgtgatgATTATTCTCATGTGTGTACCCATGTTAAACTTAAGTCCTACATTTGAAGGTATTCTGTTCTGCCTTTCCTATAACATGAATATGGTGCTTAAATTGGCTTAGAAAACCATCCTGTTCTACTCTTGATCATCGCCACCACCATCCTCCTCCTCTGCATCCTCTGTTTGTTCCCTTTTGCTGTTTGCGTGTTCTCACCACTTTATCCAGATTTTACGTTTCTTGGTAACAAGTGTGTTTTTGTACAGGTACGTATGTTGTTCTTGAGTTGGAAAGCCTTTGTGTCTGAAAATGACTAATTGCAATAAATCATCCATTCCTCCCTGGCA

Function

symbol description
purab Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 31. Orthologous to human PURA (purine rich element binding protein A).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0032422 purine-rich negative regulatory element binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-78 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 31. Orthologous to human PURA (purine rich element binding protein A).

Ensembl:

ensembl_id ENSDARG00000099614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015107 True 10270 mRNA 0.40 1 8261417 8271686

Neighbor

gene id symbol gene type direction distance location
XLOC_007708 zgc:92242 coding downstream 181001 8043441 ~ 8080416 (-)
XLOC_007707 NA coding downstream 293938 7963276 ~ 7967479 (-)
XLOC_007706 ppp3cb coding downstream 372669 7789093 ~ 7888748 (-)
XLOC_007705 sting1 coding downstream 474832 7764331 ~ 7786585 (-)
XLOC_007704 si:ch211-39i2.2 coding downstream 517264 7724876 ~ 7744153 (-)
XLOC_007711 CR407701.1 coding upstream 111863 8383549 ~ 8383923 (-)
XLOC_007712 NA coding upstream 179155 8450841 ~ 8456679 (-)
XLOC_007713 zgc:162144 coding upstream 347440 8619126 ~ 8625845 (-)
XLOC_007714 pimr56 coding upstream 450466 8722152 ~ 8724290 (-)
XLOC_007715 tgfb5 coding upstream 498466 8770152 ~ 8795081 (-)
XLOC_007641 CU855896.1 misc downstream 5853577 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 5853986 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 5854345 2406945 ~ 2407072 (-)
XLOC_007703 NA non-coding downstream 728279 7524305 ~ 7533138 (-)
XLOC_007702 NA non-coding downstream 737631 7520101 ~ 7523786 (-)
XLOC_007700 BX890601.1 non-coding downstream 899552 7361749 ~ 7361865 (-)
XLOC_007720 NA non-coding upstream 752639 9024325 ~ 9028962 (-)
XLOC_007730 NA non-coding upstream 1297224 9568910 ~ 9570304 (-)
XLOC_007731 NA non-coding upstream 1300057 9571743 ~ 9581138 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000110_00017687_00018637 PURA, PURAB, PURAA, PURA.L coding CI01000110 null 17096 ~ 18637 (-)