RNA id: TCONS_00016358


Basic Information

Item Value
RNA id TCONS_00016358
length 8351
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_007703
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 7524305 ~ 7533138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAATTTGTCTGTATTTAAAGAGTTAAATGAGAAATCCTGAATCTCTTGATTGCGTGCTTAATGAGGAAACGCACGTGAGATTACCGCGGTCTTTTGTCATGCGAGAAGCAGGAAAAGTCTCAGTATGAGCGCGGTTTAATCTCATTGCTATGCGTTCACGCTGACACGAGCTGCGTTTTTCCAGCTACCACAGGCGGAGAAGATGACATCCAGACGAGCACAGctgatttgttttctttcttttatttcagaTGGTACATTATCATGGATCACAGAAACAGTGAAATctcgttgtttttttttaacacctgATAGGAAACAGGGCACACAAACAGAAGATGAGCAGAGGGAAAGATCCGGCACAGTTAAACAGGTCAGAAAAAAAGTGACCCAGAGGGCGGTTGAAGAGGTCGAAGTTGCGGAGGAGGTTTATTAAAGGCAAGTCCAACATGGCACAGAGAGACATGCTCGAACCACAGCACACTCCACATGTCCACTCAACCAGTCACCGATGGCAAGGATTTCAAGTATAATGACTATTTAAAACTTAATCTTGTGTGCTATTTAAGTGTTTTGCCACTTCAGCTCCTTAATGAAATGTCACATGAAGCGTTGAGCATGACTGAGCATGTGCGGCAATAAGGGAGACGGGATTGGCTACATGACTCTGGGTTATGATGGACATAATCATCATTCAGCACCAACGCTGAAGCGAATCAAGTCCTGAAAGATTCTGTACATGCTTCTGCGCTGGAATTGGGAGTTAAACACTGTAAATGTCCTCAGTTGTGGTGACGTTACACTTCCAGTCACTTCCATTGAAGCTTAGTACACATCAATAATACATGTTTTTCCTCTCTGTTGTCGAATTCAGTTCACACCAGCTGTTTCTATCTTAACAATCCTGAATTAGGTGCGTTTCTAACAAGTTATTAGAGAGGTTGACTGTAGGATTGGTAACTTAGTAACCAATAGTAAACAAGGCAAGAGTTTATTCGGTATGTGTTTTCTTCCTACATTATTCACATTAACCCTTTTTTCACACCTCCAAAACCACCTTAAGTGAACGTAtaaacttgttttttgttttgttttttctaaatgtgTCATTTCCATCAGTCGTTTCTcatatgacatttaaaaatacgCATAAACACAGGCTGATGGAAACCTCGATATTAAGACAGCGCTGTAAAGCTTTTCAAAATGCATGCGTTCAAAACCTCTGATGTATTTTTTCGTCATGTAATGCAGTCATGGTGTCACATTTAGCCCGTCTGTTCATACTTCAGATTGCATTTCTTCAACAGAGTTTACTCGCAGTCTTTATGTTCTGGAACATTTTACTCAGTGCACAGTCCAGGGACACAAACGTTTTGAGAAGTTTCAGTGTGGATGAAAAACTTATGGGAATTGTTTGAAACAGTGGAcataaggctttttttttttttaaacttacacACTATTTTCAAACCTAGGTTTGTGTGAATGAGACGTAAgatttgtagctgtttttgcattttaataagtCTCTGGCTCTGTCTGATAACTCttctcaagagttcacacttagctgatgattgatagtaaagctagtttggcgtgctgtcccgggagagagccctgagcttataagatcctcgagccctgggctccctcccgttgcaaggcgagaggggagtttgagctcaggtagatctcgatgactccccttcttgcttgttATAGCTGAGTGGCAGATATGTATACTGAAGGTGTACTCAGAggttagctaatgtattttgattaattatttagagtgcttgtttttgaactgtgggaggaaaccggaggacccggggaaaacccacacgaccactgggagaacgagcaaactcagcacagaaatgccgtctggtgtggaaaggaattaaaccaggggcattctagctgtgaggcaacagcactaatcgctggccactgtgacgcccgtttgaaaggagggaaagtagggttgggtgtgggggtttcttcgagacgaagatattgagatgagaaaagtctggttatttatagcgagttaaggatcgtctgataggataatcagtcattagctaaagttggaacagctgcgaacaatcataagcacgtgatcctctcgaaatttgtttatgaataaacttcacttaaacgtATGTAAATAGACATTCTTATTTTGGTTTAggtttttggcatattatttagaCTAGATGATTTACTGTCTCagtctgatctcacaaggaaatgcaactattttacgttttgtcagtttagtggctaattcgtacaaatttgtatgactaaaatgtacgattttaaaaaaggaggcgtggcacccaaccttccccctaaacccaattgtcatcgggaatgagcaaatcgtactaaattgcatGAATAAATTCATACGTATTAGccactaattaaaaaaattacgaattgccgtgagattgtgttgactgTCTGTTCAGAAGAGTGAAGTGGTGATTTGTCGCGACTGAAGCCCCGTTCTGTATTTCTGATGAGCTCAAAGTCCCACTGACCTGtaaaacaaatagatttgctatgaCCACTTTGTCGCCTACGTTATATAGCTTTCtccatttgcatatttatttgttcattcattcattttcttgtcggcttagtctctttattaacctgggattgccaaagcggaatgtaccgccaacttacccagcatatattttacacagcggatgcccttccagccacaacccatcactgggaaacatccacacacacttattcacacacacacacactacaggcaatttagcctacccaattcacctgtaccacgttttttttacttgtgggggaaacgaagttggggagaacatgcaaactccacacagaaatgccaactgacccagtcgaggctccaACCAATGAatgtcttgctgtgaggtgaatgtgctacccactgtgccaccgtgcagccatatttatttgtataagcCTCAAAATAGATGGGCGGGTAGCAACCATTTTCAATGGAATTTAGCTAAAGCCTTGTTAAAAATTAGCTAGATGATGTTACTGATATTATCCCATCCTGTTTACCTGTGTTATCTTGGCACTTTGTGACTGTTACTTTCTACATATCCAGATTAGCGACTAAATCCCAATTCAGAAGAAGCACAAGTCACCTAATACGAAATTCTGTATTGTTGGTAAACACTTTTCTCTGTAATGTCAATAacaatttaacattataaaatgatttttagatCTTAAAGCAACACTATGCAACTTTCTTTTGTGACTCCCCCTTGTGGTTGATAATTACAAGTGCCTGTTGCCAAAGAAGCAGTGTtctgctcatatatatatatatatatatatatatatatgggtgggGGGGAGCGGATTGATAGCAGGCCAGTTTGATCGTCAGGTCACAGAGAAATGGCCCGGTACTCTGGATAGCCAGTGTGCCCCTCTTATAAATGAGTGGTTGTGTGTACcaggtagttcacccaaaatttcaGTCAATAGTAGGCAGATCTGGTAGCCACAGCAGCAGAATTTATCTAGGTAAAAGTTATTCTAGGATATAATTTCACTCTGTAATGATAATCTCAGGTGTCACAGTGGATAGCACGATCGCTTAACatcaagaaagttgctggttcgagcctcaggtgggtcagttggcatttttgtgaggagtttgcatgttcttcccgtgttcgcgtgggtttcctccgggtgctccggtttccctcacaagtccaaagacatgcggtacaggtgaattgggcaagcttaaaattgtccgtagtgtatgtgtgtgaaccagaatgtatggtgtttcccagtgacagctgaaagggcatcagctgcgtaaaacatatgctgaatgaatgattaaataatattCTCACTATTATTCTTAtatgtaataatatgtaatattattacatattctcaaaaaaaaaatttctgtctTGTAGCCAAACATTGGATCACATATGGACAAATTCAAAAAAATGTGTTCttcatattttgttaaaatttttccatatttgaccCCCACATTGTGATAAAAAAAACTACTGTGAACCTACTAGctcaaattattaataataatctgaaTAAATTATTCCCCCATGTTTATCAGTCTGATTAAACTAATAAACCTTTAAATTTTGAGTTCGTAGAAAGACATTTGCGcacaaatgaattattaattcattcattttcttttcggcttagtccctttattaatccggggtcggcagaatgaaccaccaacttatccagcacgttttaagcaggggttgcccttccagccacaacccatctctgggaaacatccatataacTCACTCACAATcttacactatggaaaatttagcctacctaattcatctatatcgcatgtctttggactgtgggggaaaccggagcacctggaggaaacccacgcaaacgcagggagaacatgcaaactccacacagaaacgccaactgacccagctgagcctCGAACCAGCAGcgttctagctgtgaggcgacagtgctacctactgggccactgcgtcgcccataaattaattatttcaaagaatttaGCAGATTCCTCGTCAATATTTCAAAAACAATGATTAATATCTGTTggctgacaagaaaaaaaaactctcattagCTCTCTTTGTAAATCCTAATTGAATTCTCAAGCATACATTTTGGAGGTGGGACTACATACGCCAATCAATGTAGAGTGTTTGTACAACCGATTTGAATGCACCAATTACAACAAGCGACATTAGCGGAATGGAAATTGAGCGATAATAACCAAACGTGTAGATCTTTGCAATCCTTCAGTCGGCAAGAGTGCTCAGTGTTGATAGTTTCACTCAAATTAACTGCGGAACAAGACAAAAGAAAATCCGTCAAGTCATTATTAAAAGTGAGagaggaaataaaaaaacataagtgcACTCCATAAAAGAAGATTAAATACTGACACTATTTTGGGCATCTTCATTAGAAAAACATTAGCGGTGGTGATTATTTTCGTGCAACCGATGATGCATTGTAGGGTGGCAAACAGTGGCTCACAGTCCAGTGGGCTCACaatgaaaagagagagagagaatcaacATCAGTACAAGTGAAATGAGTTTCAGTACGGGTGCCTGCAGCCGCCAAATAAATCAGTGTCcgcatacaataataataaagctatGAGCCTACagggtctctctctctttctctctctctctctcatgcaaTCTTCCAgctcttctctctttctctctccatcaTGCTCGCAGCTCTCGCCGGGGtgctttttttttcccctaacccacactctcgctctctctctctccagcacTTTCTCCATCCCTTTATCCCTTATTGTGTGTTTATCTCTTTTCCTGTCCCTTGCTCCCTGCAATCTAGCGCTCGGCGCGGAGGATTCGCTGTGGCAGGTTTTCTCTGTGTACACAGACGCAGATGGGCGAGGGGGAAATGTTAGACTCGTATTAAGCAAATCTGTATACGGGCCAAGTCGTGGTTGTAATGCGGCGCACGCAAGCAAACAACCAATATTGTTATGGTTAATTTAGTGTGGGTTCTTCAGATCTTGTTGCTAAGCCTGCTTAACCAGGGCTGGTTAACCACAGAGATTGACCTGACCTGTTATCGATTCCAAGAGAGTTTGAAGTTACAGCATGATACACCAGTAAACAGAATACATAGTGCACTGCAAGAAAATATTTCAGACATGTTTACTACTGAAGATATCTTCAAATAAAAAGTGTAGTGTCCTTTTATATTTTAACTCCCTACATACAGTAGAGTTGctcattttgacatatttttactaataaacataaaaaaataactaattaaggataattttaaattgtttttatttacgtATTATCCACATAAATTAATTACTGTAGCATTTGTTTCTTGACTTCTTTGAATTTAAAATAGCTTGCAATcctcacagaaaaaaaatactcCTGAGCGAATATTAGCAAACAAACATTATTGTTATGGTCAATTTAGTGTGGGTGTTTCAGATCTTGTTTCGAGCGCGTAGCTAAGCTAGCTTAACCAGGGCTGGTTAACCACAGAGACTGACTAACGCCAAATCTTGCCCTGGATTCTAAGAGAGTTAGCATGCTACGCCGCTAACAGTGTGGGACGTCAATAAACAGAATAGGCAGTGCACTGCAAGAAATTATTTTGGACATGTTTACTACTGAAAATATCTTCAAATAAGAAGtgttttatcatattatatttaaattgccaaGTAGAGATGctcatttttacatattttacaaataaaaagtaaaaatgactaattaaagaTCATTTTCAATCATTTTTATCCACGTATTATTCACATTAATTAAGTAATACTCATTTCTtgacttgttttttatttaaaattgattgCAATCCTTACAGAAAAAATTACTCCTGAGCAAATATTAGCAAACAACCATTTTTGTTATGGTCAATTTAGTGTGGGTGTTACAGATCTTGTTTCAAACGCGTCGCTAAGCTTGCTTAACCAGGGCTGGTTAACCACAGACACTGACTAACACCAAATCTTGACCTGGCCTGGTATGGATTCTAAGAGAGTTTGAAGTTAGCATGCTACGCCGCTAACAGTGTGGGACGCCAATAAACAGAATACATAGTGCACTGCAAGAAAGTATTTCAGACATGTCTACTACTGACAATTTTTTATTATCCACATTGGTATTATAGTATTACCCACATTAATTAAGTAGGCTAACCGCAGTTTCTTGGcttgtttttccatttacaaaagCTTGCAATCCTTACAGATAAACCTACTCCTGAGCAAAtattagcaaacaactattgTTATGCTTAATCTAGTGTGTGTTCTTCAGATTTTGTTGCTAAGCTTGCTTAACCAGGGCTGGTTAACCACAGACTAACGTTAAATCTTGACCTGACCTGGTATAGATTCTAAGAGAGTTTGAAGTTAGCATGCTACGTCACTAACAGCATAGTACGCCAATAAACAGAATACATAGTGCACTGCAAGATAGTATTTCGGACATGTCTACTActgaaaatatcttaaattttatTCGAAGACTGTTTGGTAACACTAACTCAAgtattaaagtattaaacacTGGCTAATTATTAACGATTTTTGtatattacacagtatttaactgcaATATGAACTGTGTTTTACTGTAGAACAGTTACAGTATGCAGTAtggtactgtattttaaagttgcattgtgaaaattactgtatattttactgtaaagatTTACAATACTGTAGGATAGAGCACGAGAAATGGTGCTGTATATGTACAGTAAATACAGTGTTTTTGCTGTAAATGATTTACAGTACAGCtgctgtagattctacaggaaatttgCTAACAGTGTATTTAAATATGAACTGTTTGTTAGTAGTTCTAAAGTATGATGTCTTACCTTTCTAATCCTAAGCTGTAAAGAAATCGATGACAAAAagtcataaattttttttaattacttttaacttatttagttgaaacctgattcactgattaaaattagttttaatcCGTTTGACTGATGCTCAGTTGAGGAGacaagaaaagttcatttgatacAACTAAAGAATTTTAGgtggtttttacagtgtaatccaggggtgtcaaaacttggccttggagggccggtgtcctgcagattttagctccaacttgcctcaacacacttgcaaggatgtttctagaaagcctagtaagagcttgagcTAGCCcatgtgtgtctgattggggttggaactaaactttgcaggacaccagccatccaggaccgagtttgaacatgCCCGGTGtaaccaatacctaaacccaactgcttattattaataagcagctaattagtactTTATTGAGATAATGTGCGTTAATAGTGTTAATTGTTCATTGTAAATTGTAACATGTTAGGACTATAAATTTTGTCCAACTTACTTTACAAGCCGAAATATGCtcagtttatattttaatatatttaatttattttaatatcttatgctgtttttttaagtgttttaaatttaagaattttgacaattttttgactggaaaacaagcaataaatcattgaaaagtcatattttacatttctgtgtgtgatttgaatgtttttgagttgaaatattaaaaaagtactttaaaaagTACTTAAAACAGGAAAGCGAAAAAAGTAGTGtggtgttttattatttattattattattttaaaaacgaatttttctacattttaattcCCTATATAGAGTTGCTC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043412 macromolecule modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0007051 spindle organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016356 lncRNA downstream 519 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00015089 lncRNA downstream 479317 7036634 ~ 7044988 (-) True XLOC_007694
TCONS_00016355 lncRNA downstream 893804 6623450 ~ 6630501 (-) False XLOC_007690
TCONS_00015080 lncRNA downstream 997489 6522215 ~ 6526816 (-) True XLOC_007689
TCONS_00016354 lncRNA downstream 1044902 6468184 ~ 6479403 (-) True XLOC_007688
TCONS_00015100 lncRNA upstream 191738 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00015101 lncRNA upstream 208046 7741184 ~ 7744153 (-) True XLOC_007704
TCONS_00016359 lncRNA upstream 430138 7963276 ~ 7967479 (-) True XLOC_007707
TCONS_00016360 lncRNA upstream 712444 8245582 ~ 8283199 (-) True XLOC_007709
TCONS_00015110 lncRNA upstream 917703 8450841 ~ 8453192 (-) False XLOC_007712
TCONS_00015099 mRNA downstream 114941 7397804 ~ 7409364 (-) True XLOC_007701
TCONS_00015097 mRNA downstream 149256 7320948 ~ 7375049 (-) True XLOC_007699
TCONS_00015096 mRNA downstream 217322 7305686 ~ 7306983 (-) True XLOC_007698
TCONS_00015095 mRNA downstream 278334 7184992 ~ 7245971 (-) True XLOC_007697
TCONS_00015094 mRNA downstream 316344 7183443 ~ 7207961 (-) False XLOC_007697
TCONS_00015102 mRNA upstream 231193 7764331 ~ 7786585 (-) False XLOC_007705
TCONS_00015103 mRNA upstream 231237 7764375 ~ 7786260 (-) True XLOC_007705
TCONS_00015104 mRNA upstream 255955 7789093 ~ 7885707 (-) False XLOC_007706
TCONS_00015105 mRNA upstream 291273 7824411 ~ 7888748 (-) True XLOC_007706
TCONS_00015106 mRNA upstream 510303 8043441 ~ 8080416 (-) True XLOC_007708
TCONS_00015098 other downstream 162440 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015086 other downstream 544975 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015075 other downstream 1261000 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 1337472 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 4452667 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015108 other upstream 850411 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 3145255 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 3774076 11307214 ~ 11310767 (-) True XLOC_007744
TCONS_00015153 other upstream 3783932 11317070 ~ 11331910 (-) True XLOC_007745
TCONS_00015154 other upstream 3805237 11338375 ~ 11363493 (-) True XLOC_007746

Expression Profile

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