RNA id: TCONS_00016355


Basic Information

Item Value
RNA id TCONS_00016355
length 3559
lncRNA type read_through
GC content 0.36
exon number 2
gene id XLOC_007690
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 6623450 ~ 6727717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGCGGCAAAGTCTTACAGTGTACTCAAGTATTTTGATTACGGTAGGAAACCACAAATTtctaatatgcagtaagttactgtaaaagttacCCATAATTGAatgcatattacagtagtgaactgttAAGAATGCATGTGGTATTTTACTGGGCGTTTTTTTCAGTAAATACCTCAAATAAAATGCGGCAAAGTCTTACAGTGTACTCAAGTATTTTGATTACGGTAGGAAACCACAAATTtctaatatgcagtaagttactgtaaaagttacCCATAATTGAATATTACAGAgcatattacagtagtgaactgtcAAGAACATTTGTGGTATTTTACTAGccatttttgcagtaaataactaaaATTGCGACAGTTAACAGTGTACTCAAGTTAGTTGATTACAGTATAATACCGCAAACTCCTGAtgtgcagtaagttactgtaaaagtttttaaatgacccacaatgcagtgcatattacagtagtgaactgtaaaaaatgtatgtgGCATTTTACAAGGCagttttgcagtaaataactaaaATTCCTGCAAAACCTAACAGTGTGGTTTTGCGTTAAACCTGTGTGCTGCTTACGTtcgtaaataaatcaaatatcacAACCAAACGTTTTCATTGTGCTTGTCAGCAATGTTTTATTACAGGAATCAAATACTCGAACTGAGCGTTATGGAACAGATAATATGATAACTATGCAACACGTGACTGGTGTTAAAATGGTTTGGCCTGAGATGCAAAAGCCACTTCGGTTTACAAAATTGAAGATAAtcatataaaagaaaaagaaaacaaactacaAATTGAGCACAGAGTGGAATATTGTAAAGCCAAAATATTTCCActacaaatatacaaaaacagCTAAACGATTCCAGCTTCGGCATACACAGCAAACCTTCGAAATAGTACTTGGCTGTTGTGTGCGATAATGTACAATACACAAAAAGTATACAGGGGGGGAAAATATGTGTGTGAAACCCAGTGATAGGAATGAGATGCTTTCAGCATGCTGATACAAACGATGCTGTAGCTTATTGCACACGGGGAACACACCACAGAAATCACCAGCTCAATCTGATGTCATccattaataaagtaataatctGCATTAAAAGAACACcactttttttaagaaaaaggctaATTTTACAACTTAGAGTTGATtagttgagttttactattttaaacCTATTCAGCCAATCTCGGGGTCTGGCGGTAgcacttagcttagcataaatcattgaattggattagaccaatAGCATTTCgctcaaaaaaaattatttatttttcatgtcgATAGGgttaggaactatactcttattctTGCGTAATAATACAATTCCTAGCCAGATCGGGGAACTAcactctcattctggtgtaataacaCAGTTCCTAGCCTTATCggggaactatactctcattctggtgtaataatagAATTCTTAGCTTTATCGTGGAACTATGatctcattctggtgtaataatagagttcctagccatatcagggATCTATACTCTTATTCTGGTGTTATAATAGAGTTCCAAGACATAATGGAGacctatactctcattctggtgtaataataaGAGTTCTTAGCCATATCgtggaactatactctcattctggtgtaataatagAGTTCCAAGCCATATCGgcgaactatactctcattctggtgtaataatagAGTTCTTAGCCATATCAGGGatctatactctcattctggtgtaataatagAGTTACAAGCCATATCAGGGGTCTATACTCTTATTCTGGTGTTAtaatatagttcctagccatatcggcgaactatactctcattctggtgtaataatagAGTTCTTAGCCATATCAGGGatctatactctcattctggtgtaataataaAGTTACAAGCCATATCAGGGGTCTATACTCTTATTCTGGTGTTAtaatatagttcctagccatatcggcgaactatactctcattctggtttAATAATagagttcctagccatatcagggatctatactctcattctggcttAATAATATAGTTCCAAGGCATATCGAGGAACTATACTCTCGTTCTGGTGTAATAATAGAGTTCCAAGACATATCAGGGGTCTATACTCTTATTCTGGTGTTATAGTTCCTAGGCATATCggggaactatactctcattctggtgtaataatagAGTTCTTAGCCATacctaggaactatactctcattctggtgaAAGAATagagttcctagccatatcagtcTTGAAAATAGCAACTTCCGTTTTCCGTTaacagaaaagtcaagctttaaatagcaaaattataacttatttttacattttttagcgAGATGCCAACGGTCCATTcctattcaattatttatgctaagctaagctaaaagtgctcctgttaAACCCAGATATCGACTGAATGGAttgaaaaatggtaaaactcaactattaAACTTCAGATGACTTGTAAAAATGAGCCTAGCTGCAAAAAAAGTGCAGAGTTTctctaaacaaaacaaatcacaaaaacGGCACTTAAACATGTTTCAGCTACGTGGAAAAATGGATACCTGACAGTGTCTAGTCAATTCTGACCTTAAGATTGCATGTTGTGTTGTTTGCGACAGTATGTTACGCTATTGATGTGCTTAATAACCACAACGAACTGCTGTCACTGGTAAAACTCCATGAATCGAATGAAAATGTAGTTATTACACCATAAGCTTTTGAAAATGGACCACAAAACTCGGAATTACTGTTAACGGATGAACTGGTGATGAACGCATCTCACATCTATTTCGAAATTAAAGCGAATCTGTAAATATGCATATTCAGATTTTCTATCTGTTACCACAGTTAATTGAGAGCATTTACTTTGTCAGAgcatatagtaataataataataaaaacaaatcgaaatgtacagaaaaaaagTGTTCAATCGGTTACTATAATAGGAAAGGGAGATAAAAATAACTATCGAGGATGTTTGGCACTAATTGTAGAGATTCTACATCTCTAATCTAATTTAAGGGGTAATTCTATTTAAGTTATGTGCCGAAAAAGATGcgttttgaatgtgtgtgtggctaCTCACACATTTAAACAGCAGTAAGAGTGGGATCTGTCAGTTTTGGAGAGGAAGCTTGagagaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtatggaGTTCAGAAACCGGAGGGGGTGAGAATGTTCATGTCTCTGTGTCTCAGTCTGTGAGAGGTTTTCTTGGCCTCCTCGCCGCTCATCTCGATCTTAGGAGATTTGAAGTTGGCGGGATCTTCAACGCTCAGGTTTATTTGGGTCTTGAGGGCATCCATCGTGTTGGACTTCTGAAGCCCAAAGAAAGACTGCAGAGGAAATCCCCCTGtattgaagaaaagaaaaaaaattcacattaagGCACAATCCTggccttatttattttatatacccCTATTCACGatatacaaataatttaaaagtgTATTCATTCAATTGAGCACATGAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006096 glycolytic process biological_process
GO:0055001 muscle cell development biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0030239 myofibril assembly biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:0031443 fast-twitch skeletal muscle fiber contraction biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0006833 water transport biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042044 fluid transport biological_process
GO:0042383 sarcolemma cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0030315 T-tubule cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015080 lncRNA downstream 96634 6522215 ~ 6526816 (-) True XLOC_007689
TCONS_00016354 lncRNA downstream 144047 6468184 ~ 6479403 (-) True XLOC_007688
TCONS_00015078 lncRNA downstream 154568 6462273 ~ 6468882 (-) False XLOC_007688
TCONS_00016028 lncRNA downstream 287699 6330241 ~ 6335751 (-) False XLOC_007687
TCONS_00016353 lncRNA downstream 289901 6330241 ~ 6333549 (-) False XLOC_007687
TCONS_00015089 lncRNA upstream 406133 7036634 ~ 7044988 (-) True XLOC_007694
TCONS_00016356 lncRNA upstream 889600 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00016357 lncRNA upstream 893804 7524305 ~ 7528592 (-) False XLOC_007703
TCONS_00016358 lncRNA upstream 893804 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00015100 lncRNA upstream 1094375 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00015079 mRNA downstream 96440 6520310 ~ 6527010 (-) False XLOC_007689
TCONS_00015077 mRNA downstream 220681 6350388 ~ 6402769 (-) True XLOC_007687
TCONS_00015076 mRNA downstream 258227 6331499 ~ 6365223 (-) False XLOC_007687
TCONS_00015070 mRNA downstream 336484 6245942 ~ 6286966 (-) False XLOC_007686
TCONS_00015082 mRNA upstream 4903 6635404 ~ 6666854 (-) True XLOC_007690
TCONS_00015083 mRNA upstream 297999 6928500 ~ 6931889 (-) True XLOC_007691
TCONS_00015084 mRNA upstream 302899 6933400 ~ 6943934 (-) False XLOC_007692
TCONS_00015085 mRNA upstream 303423 6933924 ~ 6936731 (-) True XLOC_007692
TCONS_00015087 mRNA upstream 342367 6972868 ~ 6987649 (-) True XLOC_007693
TCONS_00015075 other downstream 360145 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 436617 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 3551812 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 3551862 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 4215610 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00015086 other upstream 342367 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 731248 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 1753048 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 4047892 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 4676713 11307214 ~ 11310767 (-) True XLOC_007744

Expression Profile

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