RNA id: TCONS_00015078


Basic Information

Item Value
RNA id TCONS_00015078
length 609
lncRNA type antisense
GC content 0.41
exon number 2
gene id XLOC_007688
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 6462273 ~ 6479403 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAAAACTGGGGTAAAGATgctcaaaatattacattttaatttaattattattattaagtttagtTTTGCAGGtgaaaattttattgttttatttcaaagcTAAATATAATAAGGCACTAAATACAAATAATCttattttgctttcattttttacAGATGCCGAATCAGCATTCATCCAGTCTCACACCAACACAGTAAAAAGAGACAGGAATCCACCATACGTTTCGAACACGAAGGTTTGAGGAAATCCAGATTGGACTTGAAGTGACTCTCGGCCTGGTCCAGCCAGTTTTTGGGAGACCTGCAGATCATGTCCTGAGTGAATCTGGCCACACTTGTGTCCGGGATGGTCACAAAATCCTCAAGTTTGATTGAGCTGCACATGTCTCTGAGATGGACGCCAAAACCTTTGATCAGCACCTGCGGGAGCACCGGTGATAAGCATGGTTAAGCAGTAAGAGCAGATAACTAGGTGTTCACAAAGGCTTTTTGGAGACTGAAGGACTGAGCTATTCACATGACCCATGAGTTCATTATCTGGAGAGCCACTTAGGCTGGATGCCCTGAATACACATTGTGAGGTACATTAAGGTAAAACTAGGCTGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166024

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016028 lncRNA downstream 126522 6330241 ~ 6335751 (-) False XLOC_007687
TCONS_00016353 lncRNA downstream 128724 6330241 ~ 6333549 (-) False XLOC_007687
TCONS_00015072 lncRNA downstream 206660 6245979 ~ 6255613 (-) False XLOC_007686
TCONS_00015071 lncRNA downstream 213127 6245943 ~ 6249146 (-) False XLOC_007686
TCONS_00016352 lncRNA downstream 258269 6193249 ~ 6204004 (-) False XLOC_007684
TCONS_00015080 lncRNA upstream 53333 6522215 ~ 6526816 (-) True XLOC_007689
TCONS_00016355 lncRNA upstream 154568 6623450 ~ 6630501 (-) False XLOC_007690
TCONS_00015089 lncRNA upstream 567752 7036634 ~ 7044988 (-) True XLOC_007694
TCONS_00016356 lncRNA upstream 1051219 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00016357 lncRNA upstream 1055423 7524305 ~ 7528592 (-) False XLOC_007703
TCONS_00015077 mRNA downstream 59504 6350388 ~ 6402769 (-) True XLOC_007687
TCONS_00015076 mRNA downstream 97050 6331499 ~ 6365223 (-) False XLOC_007687
TCONS_00015070 mRNA downstream 175307 6245942 ~ 6286966 (-) False XLOC_007686
TCONS_00015073 mRNA downstream 176718 6246033 ~ 6285555 (-) False XLOC_007686
TCONS_00015074 mRNA downstream 176718 6252468 ~ 6285555 (-) False XLOC_007686
TCONS_00015079 mRNA upstream 51428 6520310 ~ 6527010 (-) False XLOC_007689
TCONS_00015081 mRNA upstream 159981 6628863 ~ 6727717 (-) False XLOC_007690
TCONS_00015082 mRNA upstream 166522 6635404 ~ 6666854 (-) True XLOC_007690
TCONS_00015083 mRNA upstream 459618 6928500 ~ 6931889 (-) True XLOC_007691
TCONS_00015084 mRNA upstream 464518 6933400 ~ 6943934 (-) False XLOC_007692
TCONS_00015075 other downstream 198968 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 275440 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 3390635 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 3390685 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 4054433 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00015086 other upstream 503986 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 892867 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 1914667 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 4209511 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 4838332 11307214 ~ 11310767 (-) True XLOC_007744

Expression Profile

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