RNA id: TCONS_00015080


Basic Information

Item Value
RNA id TCONS_00015080
length 823
lncRNA type retained_intron
GC content 0.47
exon number 3
gene id XLOC_007689
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 6520310 ~ 6527010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGAAAAACCGACTTACGcaGCCCAGCGCTGCATGGATCACCACCGGACCCCAGCAGCAGCACGGGACCTTCTATGAGTTTCGCACATATTACATTCAACCACATCTGAATGCTGCCTTCCTCAAACTGACCAATGAGAAGATCCAGCTGCGCACGGCCCACTCGGAGCTCATCGGATACTGGACTGTGGAATACGGAGGTCTCAATCAGGTCTTCCACATCTGGAAGTATGACAGCTATGCCCAGCGGGCGTCTGTGCGGGCTGCCCTAGCTCAGGACCCCAGCTGGAATGAGCAGTACATCTCGAAAGCCATGCCCATGCTGAGCTCTCAAGATAATGAGGTGACGTACCTCGTACCCTGGAGCAAAATTCAGAAGCCACCTAAAGAAGGCGGTAAGAATGTGTGCTTTAAAGGGAAACTCAACCTTTCTCAACCTCAAGTGCTTCCAAAGCTTTTTGAAGAAAACAAGAggatattatgaagaatgttttAAACCATTGACATGGTTCCAAAAACATAACCGAATAAAAATAGTTAACGGTTTGTTgagttcaataaaaataaaatcataatgacTGTTTTCGAACACGTTTCCCAAATATTCCTCATTCTCCCATTACAAATCAGAGTAAATTCTTCACAGAACAAAACTTCAGCAAACTGACCTGAACTACTTTTGTTAATGACATGAAGGGGTTTTCGAGCTGGCCACTTTCCAGATGAAATCGGGTGGTCCGGCTGTGTGGGGCAAGGCATTTCAGGCAGCAGTGGGCACACATACGGGATCAGGATATGCTCATTCGGTTGGGGTTTTCCACTC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1037 Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; intestinal bulb primordium; and optic tectum. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A).

Ensembl:

ensembl_id ENSDART00000168987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016354 lncRNA downstream 42812 6468184 ~ 6479403 (-) True XLOC_007688
TCONS_00015078 lncRNA downstream 53333 6462273 ~ 6468882 (-) False XLOC_007688
TCONS_00016028 lncRNA downstream 186464 6330241 ~ 6335751 (-) False XLOC_007687
TCONS_00016353 lncRNA downstream 188666 6330241 ~ 6333549 (-) False XLOC_007687
TCONS_00015072 lncRNA downstream 266602 6245979 ~ 6255613 (-) False XLOC_007686
TCONS_00016355 lncRNA upstream 96634 6623450 ~ 6630501 (-) False XLOC_007690
TCONS_00015089 lncRNA upstream 509818 7036634 ~ 7044988 (-) True XLOC_007694
TCONS_00016356 lncRNA upstream 993285 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00016357 lncRNA upstream 997489 7524305 ~ 7528592 (-) False XLOC_007703
TCONS_00016358 lncRNA upstream 997489 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00015077 mRNA downstream 119446 6350388 ~ 6402769 (-) True XLOC_007687
TCONS_00015076 mRNA downstream 156992 6331499 ~ 6365223 (-) False XLOC_007687
TCONS_00015070 mRNA downstream 235249 6245942 ~ 6286966 (-) False XLOC_007686
TCONS_00015081 mRNA upstream 102047 6628863 ~ 6727717 (-) False XLOC_007690
TCONS_00015082 mRNA upstream 108588 6635404 ~ 6666854 (-) True XLOC_007690
TCONS_00015083 mRNA upstream 401684 6928500 ~ 6931889 (-) True XLOC_007691
TCONS_00015084 mRNA upstream 406584 6933400 ~ 6943934 (-) False XLOC_007692
TCONS_00015085 mRNA upstream 407108 6933924 ~ 6936731 (-) True XLOC_007692
TCONS_00015075 other downstream 258910 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 335382 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 3450577 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 3450627 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 4114375 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00015086 other upstream 446052 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 834933 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 1856733 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 4151577 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 4780398 11307214 ~ 11310767 (-) True XLOC_007744

Expression Profile

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