RNA id: TCONS_00015089


Basic Information

Item Value
RNA id TCONS_00015089
length 719
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_007694
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 7016934 ~ 7045009 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATATGGCGGACGAGGATCCAAACACGAAAGTTGAAAGCGGAGACGTTCCTGCAAAAGAAGAAGAACCGGAGGTAACGGAAACCGGGCAAGAAGATGTCGCCAACAACACCGACGAGCTCCAAAAGGACAGACCGGCAGACAGCTCTTGGTCGGCGCCGATTTTGTCGTTTGCTCGTAAAGCGACGGAGACGCTGAGCAGTGGAGTGAATCATTACAGCGCGGGGTTAAAGACACCTGACACAACACAACAACACTCCTCTGATCCGGTCAAGATAGCAGctgTGAAGGATCCTGTGGTGGTGGAGAGATCGAATCTGCTCAGCATGATGAAGCTCAGCATTAAGGTGTTGATCCAGTCCTCTCTCAGTCTGGGCCGGACGCTGGACTCTGAGTATCCTCCTCTGCAGCAGTTCTTTGTGGTTCTGGAGCACTGCCTCAAACATGGCCTGAAAGTGAGGAAATCTTTCATCGGTCTTCAGAATAAGTCTATCTGGGCTCCGCTGGAGATGATCGAGAAACTGTGCCCTGAGTCTGCTGACATTGCCACTAGCGTGCGGGATATGCCGGGAATCAAGACAGGACTTGGTCGAGCTCGAGCGTGGCTGCATCTGGCTctaatgcagaaaaaaatagcAGATTATATGAAGGTGCTTATAAATAGAAGAGACCTGCTTGGGTAAGAGTCATTCCAAAAATATAATCTTCAATTacatagtg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090421-4 Predicted to enable metal ion binding activity. Orthologous to human RUFY1 (RUN and FYVE domain containing 1).

Ensembl:

ensembl_id ENSDART00000171792

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016355 lncRNA downstream 406133 6623450 ~ 6630501 (-) False XLOC_007690
TCONS_00015080 lncRNA downstream 509818 6522215 ~ 6526816 (-) True XLOC_007689
TCONS_00016354 lncRNA downstream 557231 6468184 ~ 6479403 (-) True XLOC_007688
TCONS_00015078 lncRNA downstream 567752 6462273 ~ 6468882 (-) False XLOC_007688
TCONS_00016028 lncRNA downstream 700883 6330241 ~ 6335751 (-) False XLOC_007687
TCONS_00016356 lncRNA upstream 475113 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00016357 lncRNA upstream 479317 7524305 ~ 7528592 (-) False XLOC_007703
TCONS_00016358 lncRNA upstream 479317 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00015100 lncRNA upstream 679888 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00015101 lncRNA upstream 696196 7741184 ~ 7744153 (-) True XLOC_007704
TCONS_00015087 mRNA downstream 48985 6972868 ~ 6987649 (-) True XLOC_007693
TCONS_00015084 mRNA downstream 92700 6933400 ~ 6943934 (-) False XLOC_007692
TCONS_00015085 mRNA downstream 99903 6933924 ~ 6936731 (-) True XLOC_007692
TCONS_00015083 mRNA downstream 104745 6928500 ~ 6931889 (-) True XLOC_007691
TCONS_00015081 mRNA downstream 308917 6628863 ~ 6727717 (-) False XLOC_007690
TCONS_00015090 mRNA upstream 75632 7120620 ~ 7128980 (-) True XLOC_007695
TCONS_00015091 mRNA upstream 84828 7129816 ~ 7137808 (-) False XLOC_007696
TCONS_00015092 mRNA upstream 89597 7134585 ~ 7141550 (-) True XLOC_007696
TCONS_00015093 mRNA upstream 123459 7168447 ~ 7207961 (-) False XLOC_007697
TCONS_00015094 mRNA upstream 138455 7183443 ~ 7207961 (-) False XLOC_007697
TCONS_00015086 other downstream 57304 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015075 other downstream 773329 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 849801 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 3964996 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 3965046 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00015098 other upstream 316761 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 1338561 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 3633405 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 4262226 11307214 ~ 11310767 (-) True XLOC_007744
TCONS_00015153 other upstream 4272082 11317070 ~ 11331910 (-) True XLOC_007745

Expression Profile

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