RNA id: TCONS_00015085


Basic Information

Item Value
RNA id TCONS_00015085
length 1276
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_007692
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 6933400 ~ 6943934 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGAGCTCGCATTGCGCTGAAGATCATTAAAAATATTGAGCGCTATCGTGATGCGGCTCTATCTGAGGTTGAGGTGCTGGAGCAGATTAACTCGCTAGACTGTGACAGGCGATAtGCTTGTGTGCGGATGTACGACTGGTTTGATCACCACGGGCACATCTGCATTGCCTTTGAGCTGCTGGGCTTGAGCACGTATGATTTTCTGAAGGAAAATAACTTTCAGCCCTTCTATATCAACCACATCAGGCACATGGCCTACCAGATCATCAGAGCAGTCAGATTTCTTCACAAGAACAAGCTGACACACACTGACCTGAAGCCAGAGAACATCCTCTTTGTTAATTCGGAGTATAACATTAGGTACAACTCAAAAATGAAGAGGGATGAGAGAACTGTGAAGAATCCTGATGTAAAAGTGGTGGATTTTGGGAATGCAACATACGAGCATGAGCATCATACATCCGTAGTGTCCACACGGCATTATAGAGCTCCAGAGGTTATTCTGGATTTGGGCTGGAGTCATTCCTGTGACGTGTGGAGCGTGGGGTGTATTCTCATTGAGTACTATCTAGGATCCACTCTATTTCAGacccATGACAGTAAAGAGCATTTGGCCATGATGGAGCGAGTGCTGGGCCCCATACCAACACACATGTTGCAGAAAACAAGGAAGTCGAGGTTTGTTCGCAATGATAAACTGGACTGGGACATTCACAGCTCTTCAGGACGTTACGTCAGGAAGCAGTGCAAACCCCTTAGACAATACTTGGTCTCTTCTAGCTCAGACCATGAGCAGCTGTTCGATCTAATAGAGAGGATGCTTGAGTATGACGTTACAAAGAGGATCACCTTGGACGAAGCCATCAAACACCCATTTTTCAACTCTATCAGGAAGAGCAAGAAATAAGTGGATTTTTCTGGATTTTCCTCTCTGAGAGAGGCTGTTTCTCTGACTGCATCAGTCCCCTGTATAGATCATACAGTGCTCTAATCGCTACAGCTGTATTTATTGTGCTTTTTTCAGTAGGAGTTAAGTGACCTGTTGCTCTTgagtttgtaatttgttacttgtGTTGAAACAGCATCATCAGACTGATTATAAACTGTGATTATAATTATGAAGGGGCTGGGCTTTAGGGTGTTAGGTTTGTAAGATGCTTTATATTTGTCATAGATTTCTTAGcattgttaataaaaatgtagTGGTATCTGTAAGTGTGTTTTCATTTGTCTTTCTCCAtgattcttaaaaataaaaatccgtTTGTCATCGCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-576 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CLK4 (CDC like kinase 4).

Ensembl:

ensembl_id ENSDART00000162196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016355 lncRNA downstream 303423 6623450 ~ 6630501 (-) False XLOC_007690
TCONS_00015080 lncRNA downstream 407108 6522215 ~ 6526816 (-) True XLOC_007689
TCONS_00016354 lncRNA downstream 454521 6468184 ~ 6479403 (-) True XLOC_007688
TCONS_00015078 lncRNA downstream 465042 6462273 ~ 6468882 (-) False XLOC_007688
TCONS_00016028 lncRNA downstream 598173 6330241 ~ 6335751 (-) False XLOC_007687
TCONS_00015089 lncRNA upstream 99903 7036634 ~ 7044988 (-) True XLOC_007694
TCONS_00016356 lncRNA upstream 583370 7520101 ~ 7523786 (-) True XLOC_007702
TCONS_00016357 lncRNA upstream 587574 7524305 ~ 7528592 (-) False XLOC_007703
TCONS_00016358 lncRNA upstream 587574 7524305 ~ 7533138 (-) True XLOC_007703
TCONS_00015100 lncRNA upstream 788145 7724876 ~ 7744063 (-) False XLOC_007704
TCONS_00015083 mRNA downstream 2035 6928500 ~ 6931889 (-) True XLOC_007691
TCONS_00015081 mRNA downstream 206207 6628863 ~ 6727717 (-) False XLOC_007690
TCONS_00015082 mRNA downstream 267070 6635404 ~ 6666854 (-) True XLOC_007690
TCONS_00015079 mRNA downstream 406914 6520310 ~ 6527010 (-) False XLOC_007689
TCONS_00015077 mRNA downstream 531155 6350388 ~ 6402769 (-) True XLOC_007687
TCONS_00015087 mRNA upstream 36137 6972868 ~ 6987649 (-) True XLOC_007693
TCONS_00015088 mRNA upstream 80203 7016934 ~ 7045009 (-) False XLOC_007694
TCONS_00015090 mRNA upstream 183889 7120620 ~ 7128980 (-) True XLOC_007695
TCONS_00015091 mRNA upstream 193085 7129816 ~ 7137808 (-) False XLOC_007696
TCONS_00015092 mRNA upstream 197854 7134585 ~ 7141550 (-) True XLOC_007696
TCONS_00015075 other downstream 670619 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015066 other downstream 747091 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015014 other downstream 3862286 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 3862336 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 4526084 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00015086 other upstream 36137 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 425018 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 1446818 8383549 ~ 8383923 (-) True XLOC_007711
TCONS_00015150 other upstream 3741662 10678393 ~ 10678511 (-) True XLOC_007742
TCONS_00015152 other upstream 4370483 11307214 ~ 11310767 (-) True XLOC_007744

Expression Profile

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