Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00015102 |
| length | 1699 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 8 |
| gene id | XLOC_007705 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 7764331 ~ 7786585 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0032606 | type I interferon production | biological_process |
| GO:0038061 | NIK/NF-kappaB signaling | biological_process |
| GO:0061709 | reticulophagy | biological_process |
| GO:0009615 | response to virus | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0016239 | positive regulation of macroautophagy | biological_process |
| GO:0010506 | regulation of autophagy | biological_process |
| GO:0032481 | positive regulation of type I interferon production | biological_process |
| GO:0051607 | defense response to virus | biological_process |
| GO:0039528 | cytoplasmic pattern recognition receptor signaling pathway in response to virus | biological_process |
| GO:0002218 | activation of innate immune response | biological_process |
| GO:0002230 | positive regulation of defense response to virus by host | biological_process |
| GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | cellular_component |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005776 | autophagosome | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0000421 | autophagosome membrane | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0061507 | cyclic-GMP-AMP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0035438 | cyclic-di-GMP binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-120921-1 | Predicted to enable cyclic-GMP-AMP binding activity and cyclic-di-GMP binding activity. Involved in positive regulation of macroautophagy. Acts upstream of or within several processes, including NIK/NF-kappaB signaling; defense response to other organism; and positive regulation of defense response to virus by host. Located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in STING-associated vasculopathy with onset in infancy. Orthologous to human STING1 (stimulator of interferon response cGAMP interactor 1). |
| ensembl_id | ENSDART00000186440 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00015101 | lncRNA | downstream | 20178 | 7741184 ~ 7744153 (-) | True | XLOC_007704 |
| TCONS_00015100 | lncRNA | downstream | 20268 | 7724876 ~ 7744063 (-) | False | XLOC_007704 |
| TCONS_00016358 | lncRNA | downstream | 231193 | 7524305 ~ 7533138 (-) | True | XLOC_007703 |
| TCONS_00016357 | lncRNA | downstream | 235739 | 7524305 ~ 7528592 (-) | False | XLOC_007703 |
| TCONS_00016356 | lncRNA | downstream | 240545 | 7520101 ~ 7523786 (-) | True | XLOC_007702 |
| TCONS_00016359 | lncRNA | upstream | 176691 | 7963276 ~ 7967479 (-) | True | XLOC_007707 |
| TCONS_00016360 | lncRNA | upstream | 458997 | 8245582 ~ 8283199 (-) | True | XLOC_007709 |
| TCONS_00015110 | lncRNA | upstream | 664256 | 8450841 ~ 8453192 (-) | False | XLOC_007712 |
| TCONS_00015109 | lncRNA | upstream | 664256 | 8450841 ~ 8453549 (-) | False | XLOC_007712 |
| TCONS_00015113 | lncRNA | upstream | 664256 | 8450841 ~ 8453761 (-) | False | XLOC_007712 |
| TCONS_00015099 | mRNA | downstream | 354967 | 7397804 ~ 7409364 (-) | True | XLOC_007701 |
| TCONS_00015097 | mRNA | downstream | 389282 | 7320948 ~ 7375049 (-) | True | XLOC_007699 |
| TCONS_00015096 | mRNA | downstream | 457348 | 7305686 ~ 7306983 (-) | True | XLOC_007698 |
| TCONS_00015095 | mRNA | downstream | 518360 | 7184992 ~ 7245971 (-) | True | XLOC_007697 |
| TCONS_00015093 | mRNA | downstream | 556370 | 7168447 ~ 7207961 (-) | False | XLOC_007697 |
| TCONS_00015104 | mRNA | upstream | 2508 | 7789093 ~ 7885707 (-) | False | XLOC_007706 |
| TCONS_00015105 | mRNA | upstream | 37826 | 7824411 ~ 7888748 (-) | True | XLOC_007706 |
| TCONS_00015106 | mRNA | upstream | 256856 | 8043441 ~ 8080416 (-) | True | XLOC_007708 |
| TCONS_00015107 | mRNA | upstream | 474832 | 8261417 ~ 8271686 (-) | True | XLOC_007710 |
| TCONS_00015111 | mRNA | upstream | 664260 | 8450845 ~ 8456679 (-) | True | XLOC_007712 |
| TCONS_00015098 | other | downstream | 402466 | 7361749 ~ 7361865 (-) | True | XLOC_007700 |
| TCONS_00015086 | other | downstream | 785001 | 6972868 ~ 6979330 (-) | False | XLOC_007693 |
| TCONS_00015075 | other | downstream | 1501026 | 6257687 ~ 6263305 (-) | True | XLOC_007686 |
| TCONS_00015066 | other | downstream | 1577498 | 6186714 ~ 6186833 (-) | True | XLOC_007683 |
| TCONS_00015014 | other | downstream | 4692693 | 3066633 ~ 3071638 (-) | False | XLOC_007649 |
| TCONS_00015108 | other | upstream | 596964 | 8383549 ~ 8383923 (-) | True | XLOC_007711 |
| TCONS_00015150 | other | upstream | 2891808 | 10678393 ~ 10678511 (-) | True | XLOC_007742 |
| TCONS_00015152 | other | upstream | 3520629 | 11307214 ~ 11310767 (-) | True | XLOC_007744 |
| TCONS_00015153 | other | upstream | 3530485 | 11317070 ~ 11331910 (-) | True | XLOC_007745 |
| TCONS_00015154 | other | upstream | 3551790 | 11338375 ~ 11363493 (-) | True | XLOC_007746 |
