G94505


Basic Information

Item Value
gene id G94505
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30538968 ~ 30544554 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117880
TAAAAGTCCACTTATATATTTCCTCTTGTTGTTGGACACATAGCTTtgttgtgttatatatattttaacattcatGTTACACATAAAATGTACACTTAGATGCatccataaaacaaaataatattacagtcaGTGCAATTGGATTTACAGTTCAAAcggaaataacaaaaaaaaaaaaaacattacaaaaaacatttttccccaaaatatacatatttgttcaaaCAACGAACTTGGATAATGTGTCAGTAAATTACAGAATACACCAAGATACTGACCATCAGAAAAATGAGTTTTTACATAAGCAATAAGAGCAGCATACCTCAACTGGGAGACATAAGCTCACAGCGGTCTAAAACTTGAACCTCAATATCTATTACGTACACCAGCAGAACCATGTGTGAAAGGAACAACAAGTATACATAGATATATTGTACGTACAgatatattactatattatatGCATTTACGAGGCACTGAGTGGAATAAAAGCCCACTTACGTCACAACAACGCACGTTTTAAGCGGAGAGACATCCTCCGGTGCTAAATCACTCTTACTGTAACGGGACTGCTGCACAACAGCTGCACATAACATTTAGCGACGACCGACAACAACAGTACCTTACAGAGTCCAGACGTAAACCCCCGCACAGCTGTACAATCCAGTAAAGGGCGAAATGAAAGTGTAAAGGTACTGGTCTGTGAGGCTAAAATGTCCAATGGAAGTAAATCGATTGCACTTCCCACATCTTCAAGTTCACTGAGGCCCAGGAAACCAAGTCAAGTCACGGGGTGCCTAGAAATGTGTTCTGGGAACGCACGCACTTCCAGACAGGTCCAATGATGAATATAATTGTGAATGTCTTCAAGGCTGAACATGACCTAGTCTTCCCTCCACTCTTTGGCAcggcaaaattaaaaaaatatatatatttaaactcatATTGTGATGGATTGTCCAATTTAGCAACCCTTACATTGATACGATGTGAATAAACTACTTCTGGGAGATATTCCAGAGCCATTGTGGCTCAAGTTACAGTATTTGACCTCTGCAATGCTATGAACTCTGAGATTTTGCTCATAACAGGAACCACAGTCCACCAGTCACCGTTGGACAGCAACCCAGTGTGGCCGTGGAGAGTCCGACAGAGAAGAACCGCCTTCAAGTAGTACAGAACTGCAATATGTTAAAGAGGTCATAAACTACCAAACTGCCTCTTTGGTCTAGTCTAcctcaacatttttatttctactCCCCTCTTGAGTTTCACTAGATGAcaaaatgataatgatgaaGTTCAGGGATGTGGTGTCAAAGAAAGTTAAATTGgactataaaaacatatatatatggttcagtaaaagcaaaataaacaaagctttGCTCCTTTGGCACGGAACAACATCCCACTCGCCTTATACACGGATACCTTTCTTTTACTCCTTGTTTTGAGGCAACCTTCTTAGTGTCATATCtgacagagaaataaaaatctttGGGGTCTACAAACTTATTATACGTGATCTGCTAGCAGAGGTAGATAGGTAATGAGTgacactgtacattttaaatgctttgccTCACTTAACCACTGAACAACAAGGCCAAAACAAGCTTCACATCCAAAGCAGATCTTTCTAAACTATACATTATATGCAGGAGAAGTCAACCGACTCCCAAAAGAAGAAATGTGGATTTTGAACCTGCCTGTTTCCCCTACCTCATGTTCAGAACGAGTCTTACTCGTAATTCTGGTATACATGGTGTTCACTCGTGATTCATTATACTGAACCGTGGGCAAGTCATTAGAGCTTTACAAAAGATGGGCTGCACACAGATGACTCTGGAGCCTTTATATCACGTTTTGTCAGTGGAGCACCCAGGAAAAGAATAAAGAGCAAGGGTATTCCTCAACCTCAAGCCCTTTTTACCAGACCAAAATGGAGAAAGATCCATGCCAATATGTGGTGCTCTCTCTTGAGCAGGACGTTGATGATGCGTTCGAGTATGGCCCATCTTTTATAAAACTACTCCCCAGGGCACAGGTGGAGcgacattaaacattaaacgtGTCAGACCTCACATCTTAACCAAGACTCTTTGAAAGTACTATAGCTGTCTTTCTATCTGTGGACAGTCATGTTAAGACAATCACTGGCAAGAATGGCACTGACTGGGAATGATCTAATCAACTTTTACAGTGATATAAAGCACTGATTCAACAGTCTTTACAGgacataaaacacacatgtaaacattTCTCTTTAACAGCGTGTTTACACGGttcacaaaacaacacagtgGTAGACTGATTTCAAACACTGTTATATTGTCGATCGTGAAAGCAGCTTAGAAGAACAAGCAACTGTGATGTAATCCTCCAAAAGCAGAACGTTTCAGCACTGGGCCATGACTTGTGATGAAACTTGTGACGTTTAATACTATATCAAGTATGAATTGCATGGCACCACTGTTTTCagctttttgtatttcttctttcacaGACGAAGGCAGATGAGGCCAAAACAAACCTTCCTACAGTGCTTTGAGGCGAAAGTCATTCATAACTCACAGATTGCCTGTCCTTGTACTCTGAACTCCGTCAGAGCACCCTGCACAAGCAGTGACCACACACAGCTCACTGTACTTGAAGGCCAGATCTCTAACCAGGAACAATACGATCTGTCATCGTCCTGCCATTCACATAAAAACAGAACGGTTTACAAAGGCGACTCGGAACAGAAAAGGCATCAGAACCACGCTGCAATCCTAGTTAGGGAAGGACTGATGATACAGCACATTATTTCTGTAGCCTTTGTGTGGGCATGCACAGCGCCgccttgtttttaaaagcagcaaCTCCAATGTTGCTTTATTCCCCCGGGTCCACAGAAACCTCCTTGTCTGTGTTCTGCCACACTAGAATACTGTGCCCAATCTGGGAAAATCATTATAGACTTCACAGGCATTTATTTTAGAACCTGAAATCTGCATTCAAACCCACCCTTAAAATGGCATTCGCTTGGAAAGGACAGATTTGGAATACTCATAAAGGACCTTCAAATGTTCTTGCATTTTTACAGtaaacaattttgtattttttcataaaagTGTCATGTCAATTTTAAGGCTAAACTAATTAGTAGAAccataaattacatttgcaatactATTCCAGATCCTCCCACATCCCTTGGTTACACAGTCCTTAATGCACTATTGAAAGGCACTAGCATTCTTCTTCGATTTATTTGCCCAGATAAAGAGGACCTAAAGgatatttgaaatgtgtgttttgtcatCAGCACATGGGCAAACTTGATCACTGCGGACAGTCACCCTCTCAGTCAGAGTCAATGGTCAGTGTTGTACAACCTACAATGGACAATGGCACACACTCCACTGTCTGGAGAATAACAGTAGTTACAGATGTTTCATGAgaaagaaaccaaaccaaatataACCCAGTTCTTCCACAGTGTCTCTGATGTTTCTGCCAAAGACGACGCTCATGGCCAGTGTGCTGGTCTTGAGTCACACAGCGGACCTGCTGCAGGTCTCAGTAAAAGAATCTCAACAGCTAAACTAGTCATCCCTCCCGGCCCCCAGCCACCTCTTTAACCCGTCTCCTCTGCCTAAGCCTTGCTGCATTCAGAGGAAAGATATGCACTAATCTGACTGTCACTGgcttgagaaaaataaaaaattagtCGTTCACAACAACAGCATCAACACAGAAGAGCACGAGAACAGTAAACAATCTTCTCAACTTGGTCCGAAAGCTCTGCAAAAACAGATATGTTTTCAAAGGACGGTCCGGTCCCTTAAGTGTGATAAAAGTTGCTTTTAAGAACTGGACTCTAGCGATGCTGCTGAGGAGCGCAGCCGACAACAGACCAAAGACTTATTTCTAAAATTTGCAGTTTTgttaaaacaagttaaaaaaaataataaaacacaggttCACATAGTGGACAGTCTGGTGTACAATTTCAGTAATGTATGACGATCTATTTCTCCTCATTTCCCAGAACACCGACATACTGGTCGTGTGCTTGTACTGTGGCAACCTGACAAAGGGCACCATACAAGAATAAAAATGGAAGGATTGCTTTTCACTCCCCTGCCAGGTTCATAACATTAGAATGGGGCTGGGAGGACCATTAATGGTTTCTTATTTAAGTGATGATGAGACCGACAGACAGCTTTACATTCCTGAAGCTGCGTCACCGGTGCAGGTGTGCGAGCGAACAGCAGGGATACTTTGTGGAGAGCAAATTGCAGTAAAATGTTAGACAAATGTGTAATGTTGCCATTTCTTTAAGAAGGTAAATAAGTTTCCTTCTGAATTACGTTCATTCAGAAAATTCAGTTAATCATTTCAGTCAGATCGATGGCCGACAGTTGTGGCCGCCAGTGTGTGTTCATATAGTGTGTTTAATACAGTGTATATTTACAACAACTGGGCTTTGTTAAAGTATTTCCTTTGCCTTCAGTCACTGTCTGGTATTTCAAATCTAGTActtaacacttttattttcttggacTTCCAGGTCTATAAAAGATCCTTTCCCAAGTCTAGTCATTGTAAAGCAGTTCACTAGGATTTGCTAGTAGTCAGTGTAAATCTATCGCCACTAGATTACTAGCAAACCACACCAGCaaagatttgtatgtatttttttaattagggagattacattttcattactaGTAACTGGTTTCCCTTAAATGGAGAGCTTTTGAGATGACCGATCACTTTTTGCTATGAGTAAAGCATTCAGAGAATAACAGAAAATTCCAGCACATCCTTGGGCTGAACCCAGTTCTCAAACAGTGATGCAGATGTATCTGAGATCCCTCAGCACTACAGTGTTGTCTGTACAGATGCAAGTGGCTGTGTGACAAGACTGACGTTCTCAAAGACTCTGCTTTAGTGCTGTGAGAAGCTAGTCTGGGACGGCCCCAGTCCTGACTGACCAAGGATCAAGTAACGCACATGAGTCGGACAGATTTTCCTAAGCCACTCTAATACCGAAGAAATCAACCTAGGAACGAGTTACATCTAAGTCAACATGAAAGCACACAGGAGCACTGCAATCCAATGACAAGACTATGAGGTTTCAGTTGCTTGTGGGAGGTCAACTTCAAGTATATTACAAGCTAAAAACATGTCGAATATGAAGGTTTCATTAATAAACAGACACTGTCACCAAATTGATGATCATAGCACAATGGGAAAAACCCCCAAAGTAAAACGatcaacaagaacaaaaacactgcaaatgGAACCCTTAGTGGCGATGTTCTAGAACGACTACATTCAGGAGTAGTAGAATGAGCGGTTGAAGGAGGACAGAGATGCGGGATCCTCCAACTGTTCAAGCTTACGTGTGCCATGTTTGTGAGTGCCGTGTGATTCACAGCTGGCAGGCTGGTCTACTGTCCTCCCAGCAGTGGGGCCTCTTGTTAATCTCAGTGCCCCCCCTCGCTGGCTGACAAGCTGTCTGTTCTCGTCTCTTTCAAACTCCCCGAATGTTTCTTCTGCTTGGTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117880 True 5562 lncRNA 0.41 2 30538968 30544554

Neighbor

gene id symbol gene type direction distance location
AMCG00017964 NA coding upstream 1504 30520635 ~ 30537464 (+)
AMCG00017960 NA coding upstream 51684 30462864 ~ 30487284 (+)
AMCG00017961 UBE2D2,ube2d1,LOC105010898,LOC105015883,LOC105029919 coding upstream 79346 30456550 ~ 30459622 (+)
AMCG00017959 NA coding upstream 109345 30415761 ~ 30429623 (+)
AMCG00017962 NA coding upstream 127480 30401589 ~ 30411488 (+)
AMCG00017970 NA coding downstream 52442 30596996 ~ 30604243 (+)
AMCG00017969 NA coding downstream 66496 30611050 ~ 30614334 (+)
AMCG00017968 LOC106604549 coding downstream 76269 30620823 ~ 30631235 (+)
AMCG00017973 NA coding downstream 111579 30656133 ~ 30656924 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding downstream 1064664 31609218 ~ 31621106 (+)
G94348 NA non-coding upstream 558326 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 887894 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 961565 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 1215623 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 1228115 29307100 ~ 29310853 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 41156 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 173624 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 779970 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 850592 31395146 ~ 31395366 (+)
G94594 NA non-coding downstream 873295 31417849 ~ 31418120 (+)
G94275 NA other upstream 1088621 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1892218 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2841589 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3541516 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5486594 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 275315 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 1862875 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 1916744 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 1963136 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2244887 32789441 ~ 32793604 (+)

Expression


Co-expression Network