G94555


Basic Information

Item Value
gene id G94555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30718178 ~ 30722318 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117945
CCCCTGTCAAAGTATATTCATTTGAGGTTGAATTAGGTCGACAATGTATACATTCGTGTAATCTTCTTATAATTACAAACTAACTGAAAATAGAAACGAATGCTATTCAAGGCAATGTGCTGTACAgcctttaaatattaaatgaaacccAGAATCAAAGTAGAGTTCATTTATTCAGACGTCTTCCACTGTAACATTGCACAACAACGCAGAAACCCCTGATCAAATCAATTCCCAGGATGCTTTGTTGGAAACCAATCATATCATGAAAAACAGATCACTCGAGtgggagacaaaaacaaaactgaaaatataagaTGATGTACAATGCACAGATCTCCAGAACAATCAAAACAAGGactacaattaaaaacagaacaaacaaacaaaaaacggaAGTTCAGTAGTTTAAAAGAAATCATGTAGGGGGGACTTGTGAAAATACAGAATGAGATCATTATAAACAAACTGATATTGAGTCAGACGGGTGAGTTGCCTCTTGTCTCCAAGTCTCATCCATCAATTCAGAATTAGTACCACAATGTATCGAGCAGCTGAACAAGTTTTAAAAGTCAGTAGAGTAGTAGAGGCACTACTCAAAGTTGAATCGTACTCATGTGTGTGATCGGAGGACAAGCTTTTATCATATGATTAACAttgtacattataattattagattgttttggtattatttttactactaCTGGTCATGCACACTAACCCACTCTACTGTTGCGGTTTTTGTTTAGCAGAATCATTGTAAAGGACTGTGTGACTTTCTGGTCAACCTGTGCTACCGCGCAGCGCCGGCTTCATGCACAGTAACTCCAAACAATGAGATGATCTCAAATGCATCTGCAGgcataaattatttaaaagccgCAAGTAGATCAGCGGGCTTGCAAGCTAATTTGAAAGTAAACTGAAAGATTAGTGCCATGCAAATTTTCGTTTCCCTTTTCTGATTCAAAGCCAAATGTTAAAACCGGATAATGCCTCTTGCAGACGTTTTTCCACAGAGAATCAGGATATTAAAACCTCTTGCATAGAAAACACCCTGAAATGTATAACCATACAAGGATTAGTTACCATACTATTAGCGGATCAACTTCACGAGTGGTTTTATTTGCAGAGGAGAATGAAGAACTATATGTTGAATACGATAGTAGTTGGCGAGGCTGCAGGGGACTCCTCTTCTTGTTCAACAGCCCATTTTGTTCTCATATaattttgtgtgagtgtgttataAAAACAAGCAGCACTAGAAACACTCCCTTCGAGTCCAAGAGGAGGAGCACAGACCACAGTCACTCTTTTGCAGTGACATTTTAATGCCAAATGGCCCTGTGTTTGCGAAAAGATAAAGATTACCAAAGCCTTTGGGAAGGGTTTAcaaagctgcagttttggaaaccCAGTGAAGAGGACAAAACAcatctgcaataaaaaaaatcaaccatCAAAAGTGTTGcaaagcataaataaattatacagccCCCTAGACAATACCAAAAATGGCACAAACGCTTAAAAGAGGAAAGAATAAATAAGAGTGCTTGCAGTTTATTGAACAGAGAGGAGTAAACTTAGTCTAAACCACAGGAAtgatatgaaacattttttttttccagaaggGAAATAGAGCTTTCATTGATGCAAAAatctcattttttttccctgtccATCTCTTGCCTACAGCCACTTTGTTTCCTCAATACAAAAGTCCCTGTACAGTGGTTTCACCCCTGGAATGAGTATGTAGTTCAGAAAAATCAAACAACACCTGTAACTGCATTTGGGATtgcaaacaatcaaacaaggaaaaaaaaaaaagctacggCAAATTGGGTTGTCCTCGGGATACAGTCCGGACCCTAGTGAACCCGTGGAAACTTCAGTCAGCATAGCTCAGAGGATCACAGGACGAGGGAGATGCTTCCTGTTTTAGCGTTCACCCCCTGCGGAGCAATCGGGAGAAGAAAGACCAAGTCCCACCAACAATTTCCTCTGAGCACCAAGAGGTGTCTGGTGCTCCCTGTGGACCTCCAGCCATGGGGACTCAGTCAAGGCATCAGCTACTCAAAATGACAACCTCCTGAAGCTGAAGTACAGAAAGCAGAATGGAGAATTAGTGTGCTTTAGAAGCACAGAGTCTCCCTGTGCTCCGTTTGGAACATTGCTTCACGTTACTGAAGTCAGATTAGTTCAGAAAGCAAAACACATCGAACGTGTTATTATATGTGTGAATGAAGCCGATATCTGTGGCAGATTCTCCAGAGGTCCCCCTGGTTATTGCTACGGACGTGGAAATTATATTTGCACATTTGACTGCCTTCTCACCCGCAGGTGTTCTGAATTTACGATTGATGACGTAGAATATTTATGTCTTCTTCGATCTGTATCATTCGAGcgataaaaaaaagtttttacaaTACCGTATCATGTCTCTCTTTCTTATGAATCCTATTTacacaaagaacaaaatatcctaagcaataaatataaatctctaTAAGAACATGAATTCCGTACAGGTTCTCGTAAAGCTCTCTGTACAAAATACATCTGTAGATTGCATAGGTACTTTCTGAAAAGGTGTTTTACAGAACTAGAAGCTTATTCACAGAGAGCGCATAAATATCTACACACCGTTgattcagatttaaaaacagtccatgatctttttttccccaccaaaCAATATATAGCCATCCCATCTTTTAACAAAACACGTTCAATTTCTAGTTATTCATCGGGGGGAGttggaaacacaaaataaattcacaacGGGCTTGAGGCAACTAGAAGCACACGTTCCTAAAACAGATGGATTACTCAAGCTTTATGCAGAGGGCTATCCTTTAGAGGggtaataatatacatatgaGGGATCAGGAAAGTGGAGTTACAGAGAAGTAAAAGACAACATACAAGCCAGTGAGAAAAACAGGAACAATACTCAAGCTTATTCCACATTGGGAAACATGTACACAGAGGGAGAAGTTATACATAAGCAAGCTATATATGTCACATTATACACAGCCTATTTATATATACCaacaacaatgttttattatttataaccgTGCAATTATGTAGTTCTGAGAAGTGTTAAAACCACATTTAGGTGTCCGAGTTTGTCATGGTATGTTTCATGTCTTAAGAAATGGCACCACGACGGaggttttttaatataactttttCTTCATGAAAACCTGATTTGAAGCCACTGCAGACGTCTATTGGTGAATATGACTGatgcttaattaaatgtataatgtaaatagTGCAAAAACTTCCCTGTACCCATCCTTCACCATAGTTTGGATTATCATCTGAATGTGTGGAGGCAGGTTAGTTTCTATGTCCATCCAATCATCGGCTTCATGTTGACATGCCCTGGTTTTGGGGTCAAAATGTTGATTGaatgaacaaaaacagtaaattaGTAAGTGTGGTGCCATTACTTGTACAGAATCAAACCTGTGTCTTGTTATTCATGGTCTAGAAGCACAGAAACAGATGACAAAAACTTGAATATCAGCGTTAAAGCCCCCCCCTAAACAGTGTCACCCACAGATGATTCCTGTAAATCCACTGCACACCCAACTGCCTCCTTTCGAGAAAACAGGTTAGTTTTGCTTTAGTGTAAATACTGAATCATAACCACTCTCATTTAGTTGTATGTTGTATGTtggggatttgtttttaataagtatgataaattaaaaaagctaCATTATCCCAGCTGCTGAATGGGATCTGTAAAAACCCTGATTTTGACCATTTCAGCAgctcttaaaatacattcacagcCGTAGCCCTACATTAGTGTTCCGCCAAGATGGTGCCAACCCCCGCCCCCGCTTCATCCCCTGCCACCTGCGCCCTCCTCGCGCCGCAGCACGGTGCCCTCTCTCCTGCACCTCAGGTCCTGGCAGGGCGGTTCTGGTCCATGGCCGTGAAAAACACGCAGACGGCCGTGGTCACCAGCGTGTGCATCCCCTCGTAGAGCAGCTTGGGGGAGAAGACGCTCCAGATGAACAGGTGGTAGCGTAGCGCCGTGACGAGGACGACGTACGCCGCGGCCGGGATGGAGCGCAGCAGCGCAAAGCAGTAGCAGCCGTGGCTCATCGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117945 True 4141 lncRNA 0.41 1 30718178 30722318

Neighbor

gene id symbol gene type direction distance location
AMCG00017973 NA coding upstream 61254 30656133 ~ 30656924 (+)
AMCG00017968 LOC106604549 coding upstream 86943 30620823 ~ 30631235 (+)
AMCG00017969 NA coding upstream 103844 30611050 ~ 30614334 (+)
AMCG00017970 NA coding upstream 113935 30596996 ~ 30604243 (+)
AMCG00017964 NA coding upstream 180714 30520635 ~ 30537464 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding downstream 886900 31609218 ~ 31621106 (+)
AMCG00017982 NA coding downstream 923507 31645825 ~ 31649592 (+)
AMCG00017981 NA coding downstream 937583 31659901 ~ 31675037 (+)
AMCG00017985 NA coding downstream 1018250 31740568 ~ 31745981 (+)
AMCG00017989 NA coding downstream 1392843 32115161 ~ 32123373 (+)
G94522 dcaf10,LOC102795877 non-coding upstream 127002 30585710 ~ 30591176 (+)
G94505 NA non-coding upstream 173624 30538968 ~ 30544554 (+)
G94348 NA non-coding upstream 737536 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 1067104 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 1140775 29577156 ~ 29577403 (+)
G94583 NA non-coding downstream 602206 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 672828 31395146 ~ 31395366 (+)
G94594 NA non-coding downstream 695531 31417849 ~ 31418120 (+)
G94599 NA non-coding downstream 794510 31516828 ~ 31517029 (+)
G94601 eif4e,if4ea,LOC103354029,LOC107085786,LOC107730661,LOC105908755,LOC107696296 non-coding downstream 877442 31599760 ~ 31603112 (+)
G94275 NA other upstream 1267831 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 2071428 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 3020799 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3720726 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5665804 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 97551 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 1685111 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 1738980 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 1785372 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2067123 32789441 ~ 32793604 (+)

Expression


Co-expression Network