AMCG00018169


Basic Information

Item Value
gene id AMCG00018169
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3161231 ~ 3167163 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018169
AGTAAAATGGCTCAGGTCTGCAGTGAGGTGAGGACAGCATTACCGTCTACGGAGGCCGAGTTTGTGTTGCGCTTCAGTGACAGGATTGACCGCAGCCTCGCCTCCCTGCTGGAACAGGCGCGGGTGCTGTTGTACGGGGAGACGGTGGGGGCCCAGCTGTCACAGACCAGCCAGGTGATCTTGGACTTTGCCTGGGAGAGGCTGAACACGGGGACATGGAGGGACGTGGACAAGGAGTGGAGACAAGTCTACTCGTACGGCTGCCTGTTTAAGGCCGTGTGCCTGTGCCGGGGGGAGCCTTCCCAAGATGCACTGCAGGAGGCCATAAAGACCTGCGATATGGGGCTGTTGATGGGAGCAGCCATCATGGACAATGTGCTTCAAAGACTTGTGGACATCCTGCAGAAAATGGTGAAGAAAAGGGTTCTGGAAAACGAGGGTCCCTGTGAAGTCCACAGTGCAAAGAAAGTCAGGACcgaatgtgtttgtgtgccagAGATTAGCCCGACGCGGGCAGTGCCCAGGGTCCGGTGTCCGGCGCTGGAGTGTTTCAGGACTAACTACCTCATCCCACAGAAGCCCGTTATCTTGGAGGGCGTCATCGACCATTGGCCCGCCTTCAGGGAGCACCAGTGGAGCGTCGGGTATCTGCGGACGGTCGCGGGCTGCCGGACTGTGCCTGTGGAGGTCGGGTCCCGGTACACAGACGAGGAATGGTCACAGACCCTCCTGACCATCAGTGAATTCATAGACCGCTATATTCTCCGGCAGGAGGAAGGAGCTGGAGTGGGTTACTTGGCACAACACCAGCTCTTTGATCAGGTCCCAGAACTCATGCAGGACATCCGAATCCCTGACTACTGCTGCCTCGGCGAGGAAGACGAGGACGACATCACTATCAACGCCTGGTTTGGGCCTGCAGGGACCGTCTCTCCTCTACACCAGGACCCCCAGCAGAACTTCCTGGCCCAGGTTGTCGGAAGAAAGTACATCCGCCTGTACTCCCAAGAAGAGACGGAGAGGGTGTACCCCCACCAGTCGCGGCTGCTTCACAACACCAGCCAGGTGGAGGTGGAGAATCCGGATCTGCAGCGCTTCCCTGCATTTGCGGACGCCCCCTACCAGGAGTGCGTCCTCGGGCCCGGAGAGGTGCTGTTCATCCCGGTGAAGCACTGGCATTATGTGCGCGCGCTGGACCTCAGCTTCTCCGTCAGTTTCTGGTGGTCATGA

Function

GO:

id name namespace
GO:0070544 histone H3-K36 demethylation biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
K10277 KDM8, JMJD5; [protein]-arginine 3-hydroxylase / protease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018169 True 1230 mRNA 0.59 7 3161231 3167163

Neighbor

gene id symbol gene type direction distance location
AMCG00018167 NA coding downstream 10775 3142474 ~ 3150456 (-)
AMCG00018168 ubfd1,LOC106601113 coding downstream 57789 3099730 ~ 3103442 (-)
AMCG00018162 NA coding downstream 85595 3073189 ~ 3075636 (-)
AMCG00018161 NA coding downstream 92677 3061613 ~ 3068554 (-)
AMCG00018160 NA coding downstream 100926 3058055 ~ 3060305 (-)
AMCG00018170 hs3st4,LOC103360498,LOC107568293 coding upstream 232130 3399293 ~ 3399919 (-)
AMCG00018171 NA coding upstream 314545 3481708 ~ 3483903 (-)
AMCG00018176 NA coding upstream 611012 3778175 ~ 3809520 (-)
AMCG00018177 cog7 coding upstream 648372 3815535 ~ 3826564 (-)
AMCG00018187 tsr3 coding upstream 846768 4013931 ~ 4018824 (-)
G114720 NA non-coding downstream 19921 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 83471 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 162973 2996035 ~ 2998258 (-)
G114554 NA non-coding downstream 492570 2668460 ~ 2668661 (-)
G114456 NA non-coding downstream 785496 2368430 ~ 2375735 (-)
G114739 NA non-coding upstream 233269 3400432 ~ 3401938 (-)
G114785 NA non-coding upstream 740856 3908019 ~ 3910399 (-)
G114915 NA non-coding upstream 1128148 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 1218770 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 1422132 4589295 ~ 4590068 (-)
AMCG00018142 NA other downstream 513420 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 551752 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 872369 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 1093647 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 1154595 1985149 ~ 2006636 (-)
G114838 NA other upstream 860853 4028016 ~ 4087031 (-)
G115020 NA other upstream 1418899 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 1478984 4646147 ~ 4651641 (-)
G115174 NA other upstream 2119223 5286386 ~ 5287873 (-)
G115183 NA other upstream 2132944 5300107 ~ 5304429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location