AMCG00018171


Basic Information

Item Value
gene id AMCG00018171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3481708 ~ 3483903 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018171
ATGGCACTTTGGTCCAGCACTTCAGTCTTCACCTCTAAAGTTCCTCGGAAGATCCTCTTCATgttcactctctccctctcggtcACCTATCTCTTCTACAGCTTGGTGAGCTGCTACAACTCGCTGCAGTTCCCCTTGCAGGAAAACTATCTGTACCAAGGCAGGCTGGTGACCGAGGAGACAACTTTCGTGGCGCTGAGAGAGAAACTTTACTCCGCCACCTCCCAGGGCTATTTCGGCGAGGACGTGGTCGACAGGACAGCCACGGAGCAGACCTTCGCGGGGTATGCGGCCTCTCCTGTGGACCAGGCAGGGCATGTTGAGCTTGAGCAGAGGGCCACCGAGTGGACGAGGACCCAGCTGGCTCCCACGGAGATGATCACGGGGGGACAGCATGTCATTTTGGAGAGGGAGCACCAGGAATCCAGCACCACGGACGACGAGCTCAGCCGCAGGGGGAATAGCACCCCGGATTACGGGGAGAAGAAATTGCCCCAAGCCATCATCATCGGAGTGAAGAAGGGAGGTACCAGGGCGCTGTTGGAAGCCCTGAGGGTCCACCCGGACGTCAGGGCGGTCGGGGTTGAGCCCCATTTCTTTGACAGGCACTACGAGAAGGGCCTCGATTGGTACAGGTGCGCGCTGTCCCCGTCCTCctttacGCATGGAGTAGAACAGAAGTTGTCTTTAAAGCAGGCTGGGGAGAACAGCACCAAGGAGAGCTTTTCCACACTATaa

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018171 True 738 mRNA 0.57 2 3481708 3483903

Neighbor

gene id symbol gene type direction distance location
AMCG00018170 hs3st4,LOC103360498,LOC107568293 coding downstream 81789 3399293 ~ 3399919 (-)
AMCG00018169 NA coding downstream 314545 3161231 ~ 3167163 (-)
AMCG00018167 NA coding downstream 331252 3142474 ~ 3150456 (-)
AMCG00018168 ubfd1,LOC106601113 coding downstream 378266 3099730 ~ 3103442 (-)
AMCG00018162 NA coding downstream 406072 3073189 ~ 3075636 (-)
AMCG00018176 NA coding upstream 294272 3778175 ~ 3809520 (-)
AMCG00018177 cog7 coding upstream 331632 3815535 ~ 3826564 (-)
AMCG00018187 tsr3 coding upstream 530028 4013931 ~ 4018824 (-)
AMCG00018188 NA coding upstream 541840 4025743 ~ 4026925 (-)
AMCG00018186 NA coding upstream 549787 4033690 ~ 4057473 (-)
G114739 NA non-coding downstream 79770 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 340398 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 403948 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 483450 2996035 ~ 2998258 (-)
G114554 NA non-coding downstream 813047 2668460 ~ 2668661 (-)
G114785 NA non-coding upstream 424116 3908019 ~ 3910399 (-)
G114915 NA non-coding upstream 811408 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 902030 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 1105392 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 1195637 4679540 ~ 4679749 (-)
AMCG00018142 NA other downstream 833897 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 872229 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1192846 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 1414124 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 1475072 1985149 ~ 2006636 (-)
G114838 NA other upstream 544113 4028016 ~ 4087031 (-)
G115020 NA other upstream 1102159 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 1162244 4646147 ~ 4651641 (-)
G115174 NA other upstream 1802483 5286386 ~ 5287873 (-)
G115183 NA other upstream 1816204 5300107 ~ 5304429 (-)

Expression


Co-expression Network