AMCG00018228


Basic Information

Item Value
gene id AMCG00018228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4746580 ~ 4761133 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018228
ATGCTTCAGATAGCACAGCTGCTGGACACATCCTTCAACACTGAAGAGATCATGCTGTTTCTCAAACCCAGTGGCAGGGTCACTCCTAGGAGGGAACCACTTGCCAGCACAGGACTGTCAGTCACCCCCACAGACAGCCCCCTGCTCAGCCGGCCACTCACCCCCGACCGGCGCTCGGAGGACAGTGTTGCCACAGAGTTGACGGACACAGTGCAATCCAGACCAGTGCTCAGCATGGCGCACCAAGCTGCTGACGTGGGCTCCTCCGCCCCGGGGCCACACAGCGTCTACACCGACCAGCTGGGCTTCTTCTCCATGGACGCCAACGTCCCAGGCTTGTCCCAGGTCATCCTTCACAAGCTCAACATGAAGGACTACGGGGACTACAGGGCTGCGCTGGAGGGCAAGCGTCCGGGGGCGGTTTTTGGGATCCGCTCCCATAAAGAGATGTTCCAGAAGATGGAGGACACTTTCAAATTCTGCACCGGCTGCAAGAAGCTGCCTGGGAGCCTGTCAGCCCCCCACAGCCTGAGACGCTGCAAGAGGTGTCAGAACGTGTACTACTGCAGCAAGGAGTGTCAGAGAGAGGACTGGCCGCAGCACAAGAAGTTCTGTAAGCAGCTCAGACTGGTGGCCATCGACCGGCTGGTGGAGTGGCTCGTTTTCACTGGTGAGAGCAACACCTGGCGGCCGCGGAGTGACGGGCACTTCAGTAGTTATTTTGCAGCGGTGCGCTATGCCATTTCAGTAGCTTCCTATGGAGACATTCCTTTTCCCACAGCAGACTGGCCAAGGTCAGTGACAGAGGTGGGTGGCTGGGAGGACTGGTTCTTCATGCAGGGGGACCTAGGCCCCCGTCTGGACGCCATCCTCACCGGCCGCCACATGGGCATCCTGTGGGCCAACGCTGGCAAGCCCCGGCCGGAGGAGGGTGAGCTGAGGGAGTCGGTCAAGCGCGTGGCCAGCGAGTTCCTGTCCCGGCCGCTCACCCTGGGTCTGGGGCTGCGGCTGTTCGGGCTGGACCCCCGTGGCCGCCCCCTCACCGTGCACCTGGTGGGGGCGTCCCACACCGAGACCCTGGGGGCCCAGCCCACGGACCTGGACGAGCTGAGTCACATGTTCCCCGCGCACCAGGGGCTGGAGGTGGTGATGGTGGGGCCTGAGGTGGTGGAAGGCCCCGTGATGAGGCCCCCACTGAGGGCCCTGGGGCCCCGAAGGAAGGTCTACATCAGTTGCTACAAAGGCCTCTACCACCAGTTCTGGGAAGAGCTCGTGGAGAAGCAGGAGGCGGCGCGGCCGGACTTGGTGGTGGGCTTCCATCCAGGTTTCCACGCCACGCAGGGCCTGAGCGAAGGATGGCTGCCCACTCTCCTGCTCCTGCGCGACTACGGCATCCCCTCGCTCTTCACCGTGTACAACGAGCAGGAGCTGAAGTACTCCCTCCAGATCCTGGCGGAGCTTGAGGTGCGCGTCCTGGACTGCGGGGTTAACCCCTTCTCGTCCTTGAAGCCGGAGCAGGTGCAGTCCTGCCCCAACAAGCCGTCGGTCCACTGCAACGCACAGTACGTCCGCTTCCAGGGAGCCGTGGACGACCTCGGGCCAcaacaggaagaggaggaggaagaggagaagatcTGAGGGGATCAATGTAGCCATTATGTATGAATGGGCCACCTGACACCTCTGTGGCCAACTATAACATGTGACAGTAGACTtctgatctgtgtgtgtatgtgcgtgtgtgtggggtggggggttctcCACTCCTCCGAAACGGTGTTTAATTTCACATGTTGTCAATAATCAGGCACTGAGTACACAGGCTAGTGGAGAGTCACTCTAAATCAACATGCACTTGTGTGCTGACAACATGACAGATGCAGTTTTAGTGGCGGAAATACAAGACGGTCTCGGCTTCTGTGGGGGTCTCTGGTTACTGCTCTGGCCCCGTGGACGCTCTGCGCTCCAGAACCACTTTCTGTCACGGCCTGCCGCGGTCCTTTGAATATACGATATCGCCGCACTGCAGCTTCAGCGAAGTGTTTTAATCTTTTCAcacatttgaatttcatttccatttcGCGGCTCCTCTTCAATGGCGTATTCTTCTGCTGTGTGTGGAGGGGCGGCACTGTTTACAGACGGGGTCATTATCTCTCACTGGGAGAACGGGCTGTTTCTTTAGTCAGGACCGGACATGTGAATCGCATTACTGTCCTCGGGGAGAAACTGCACACGCCAGGCTGCCCTCCGTGGAAAAGCGGgacaacaaaactaacaaaccGAAAAACTGCCAGAATTACACTGATATCCCATGGATCATCCAACCAGGTTTTTAACATGCAAACCACCACTAGCACTTGAATTAAGAGGTACATCCCCATTGGAAgataaaatatgacattaaatCCCGTCATTAAATGTGGTTTGAATGCTGGAGGTCAGAGACTATGGAGATGGTTATAGGTGTGAATGAGTGCATTTGCAGTCTGTGAGCTTGATCACAATAAATGATAATGGAGAATGTGGGAGACGTATTCTGGTTATTGACAGTTTGCTGTGGCTGCAGGTGTCCGTGTGTGGAGGCACATATCCTCGGCTCTTCGGCAGGTCTGGCTGGCAAAGCTCTGTGTAGAAACAAGCATTTGTGATGTAACTTTGACTGGAGTAAGAAGACATTTACAGTTGTATGCAAAAGTTTGGGCACCCCTGGCcaaatgacatgttttgttgattttctaAGACGTTAACACAACCTCTGCAGTgaacaaactggaaaaaataaaaccgtaAATGTGCAAAAGCTTGGGCACCTTATTGGTCAGTTTAAGTTTGTTCACTGCAGAGGTTGTGTTAAAAGAcccttcatttatttctctaaaGAGCTTCAGTTCTCcgttaagtttttgttttactgcagttCTCCTTATTTGCATTTGCAATATCTTTTATGAGTCTCAAGCAAATGTCTGCAGATCTGTTTTGCGTTTACTGTATTATGCCTATTTTGTATAACCAGATAAAGCCCCtattctttcttctctttttatCTTTAATATTGTGGTTAAACTGCAGTTTCAACTGCTGCAATTTCTCTCTCACTGCAAACCCTTGACAGAAGAAAGtgtctttgtttaattattgttcaattgccaaaataaaaatgatcccCCTGATAAAACGCCAGAAACGTAAGTGATGCAAGAAAATAATCCAACAGTCaaccttttttattgttattatttttgttttaatcaaatagAAACATGTTCTCACAACTCACAatcaagaacaaaataaaaatcactacTGAGGTCGTACAAAAAGGCAAACTGCACTTAAAAACATAAGAGGGGTCGGATCCTAATCCCACCCATGGCATGTGAAAATACAGGGCTCAAACGCAActctcccagcatgcattgcttCACATTTCTCCATCCTCCCCAGTTTGTGTATTGTCAAAAGGAGACCGAAAGAAAGGAAGGTTTGCTTGCCTCCTGTTCATAATCTCGTCCCCTTTACTGCAGATTAAGCAGAGCATTGCCTGAATGTACAGAATTTAAAATCTCACACCCCGCCAGTCCGTCTACGAAGTTGCTCTTCGAATAGCTGCAGGGATTATGGGGAAGGAAAAGGGGGTGACTCAAAAATAGacttttagattattattttttaaatctggtgGGTTTAAATTGAGGTGGAAGGCAGCGCGGGTTGTATTTGCATTTACTCCTCACTGCAATTATATGAGCAGTTAATAGGATTATTTCAGCTTCCGCACACAATCTGGGATTTCTTGTTTCCgtcaagaaatgtaaaataaatccaatgaaacagatttaaataGGCAAAGAAGGAAGTGCAAATGAATCGCATCCCACTCACAGAGAAACAAACCAGGCGTATgtcatttgtaacatttatttctaattacCTTTCCACATCCTGAAAGGCTACCACTCAAAAGAGAGATTAAAGATTGATCTGACTCAGAAATGAGCAGTGAGGTTCAGAGAAATACAGATTGAATTCATTGCAGGCTgaggagagacacgtgtgttaTCCCGGGCAGTGTAAATTAAATAGTCTTTTTGCCGTGGGCGGATTTACTATCTCGGGTGGAAGAAGGACTGTGAAGGAAAGCACAATAACGTTTATAAAGCAGAAGGAAACCGGGCTAACGATTAATTTAGTAGTGATTTCTGTTATAACTTTCGTTGCAATGATCTGTGTGCTGAGCTATAGCGCCCTGGTACGTTGTGAAGAATAAAACTTTGATTAACAGCTACACAGTGTCACTCATCACTGGGACAGTTCTATATACTTTTATAAACAAAGACTGTCCCAATAGTGTAGAGTAACATTCTCATCACTGCTTTCAATTCCTTACAGAAGAGCATGAAAGTTTACTTCGAGTTTAATGAGGCAGTTAATGAGTATTTTGGCAGTAGCTGCAGGAAACATGATTTTCTCGACCATTGAAAACATATCTTGGCTACAGACATTGTATGATGACTGtagaaaactaacaaatacatgATGGCACCTGGTATCGCTCCTTTACGACATACAGAGACTAGCAAAAGCAGACACGggtaaaatacattgtttaaagccTCAAGATGTGAACAGAACTAAAGACCAGACTGGATACACATTTGAGGTAAATGGTAAAGGAAACGCACAgaagctgctgctcagtggaGGAGACCAAAACGGAGTCGCTAGCGAAGCACCGAGCTGCACATTGTGAAAATAAGGTCCAAGATGTACAGAGCCAGGTTGATGAAGGTGAAGATGGTGACCACCAGCAGGCTGTCCCACAAGCAGTTCTCACAGTCTGGGGGACGGGGGTAATTTCTGAAGGCGGACAGGGGCCAGAGGATGGCTGCGGAGACGTAGAGAAGCACGGCCACCACGCTGAAGATGGGGGCGATTTTGTTCATGGGGAAGACACAGGGCTTGCACAGAGTCGGGAGGATGTTGTAGATGAGGATGAGCAGAGTGACGGGGAAGCAGACAGCGTAGACGACGATGCACCACTCCATCCCTGGCTTTCCATAGTAACCGGTCAGGGAGATGAAGATGATGCAGGATATGAAAGACTCCAGGACCTTGAGGAAGCCTGGCATAGTGGACATGTAGCCGCCGCCGCCGTCCATTTTGGCCATCACGGCCTCGATGGTGTAGGTGATGAAGCACAGAAAGGACACGCAGGTGGTCACCAATGATAGGACGCATTTTGAACAGGTGTAGAAGACCGCGTAGAGGACTGAAGCCGAGAGGAGCATGATGGCGAACAATATGCTCATGCCAGTGGTGAAGTCACCCCAGTCAAACTGGATCAATTTCAGCAACAGAGTGATCCCTAGCAGCTCAATAACTATGATCACCACAGTCATAAGGAAGCAGAAGACCCACGTGAACATGCACCAATTCCAGTAGGAGAACGGAGAGGGCCCCCTGAGGCTGGCCAGGCACATTGCGAGGATGCAGAGCACCACCGCGATCAGACGTAATATCCCCCTCCGCTCTCCCAGCACCGACGGggtcagtttaattttaaagtctTGTCCAAACATCTTCCTCCCAAGATCAGTATCCGTCTACCTCCTGAGACAATGAACCTGCCCTGCGGACCTCTCGTCCGGTATGAACGCAAACCCCGGAGATGCAATGGGATGAGAGGTGCTGCTTTCTTGTCTTCCTTgttcctttcttcctttttgaCGACTGGTGCTCTGGGCCTGCACTCAGCATAGGTGATTCAGTGAGAAGGCGGCTGGCTGTGTGTGAGAAGTCCCCAGCGTGGACACCTTGCTGAGGAGTAAGCAGGCTTCTGTTTAATGTGGTGACTAACTAGTGTCATATCTGCCAAACTGATTATAGGAATAGGAAGCTTTTTGCCTAAGCAGCATTAACCATGAGTGGGCAGGGAGGGTCAGATAAGCCTTGTATCCCACTTTGCAGGTTCACAAAGACCAGCCTTCTCTATTTGAAAGACTTTGTAGGAGAAATGTTTGGAAGCTCCAGGGCAGGGCTTTACAGCTggtatgttttaagaaaatatgtttcaaGGACATTAGTTATTTTTCAACATCCCTTATCTATGCAGAACATGATGCACCTGGCCTCTGGAGAAATATCTTCTGCTTAGCATGCTTAAAAAGACCATGTGAATCGTTAACCGCACCCTTACTTACCGCTGTGTAGAAGTATTTGTCTTTTCTGTAACAAGTCAGAGAAACTTTGTATTACTCTGATACTGTCCCTCTTCATGCTGCATGAATAAAGGTGTtgcaacaaacacaa

Function

GO: NA

KEGG:

id description
K17656 MSS51; mitochondrial splicing suppressor protein 51

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018228 True 6315 mRNA 0.49 8 4746580 4761133

Neighbor

gene id symbol gene type direction distance location
AMCG00018227 stub1,LOC106601937 coding downstream 2008 4736365 ~ 4744572 (-)
AMCG00018226 NA coding downstream 48678 4695362 ~ 4697902 (-)
AMCG00018230 NA coding downstream 56701 4688815 ~ 4689879 (-)
AMCG00018222 metrn coding downstream 74224 4666185 ~ 4672356 (-)
AMCG00018219 NA coding downstream 106322 4639704 ~ 4640258 (-)
AMCG00018229 NA coding upstream 2595 4763728 ~ 4786482 (-)
AMCG00018232 NA coding upstream 62692 4823825 ~ 4826013 (-)
AMCG00018239 NA coding upstream 388767 5149900 ~ 5155174 (-)
AMCG00018240 NA coding upstream 394239 5155372 ~ 5171519 (-)
AMCG00018246 nubp2,LOC102775692 coding upstream 445250 5206383 ~ 5212355 (-)
G115037 NA non-coding downstream 66831 4679540 ~ 4679749 (-)
G115021 NA non-coding downstream 156512 4589295 ~ 4590068 (-)
G114941 NA non-coding downstream 359689 4385933 ~ 4386891 (-)
G114915 NA non-coding downstream 394217 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 836181 3908019 ~ 3910399 (-)
G115071 NA non-coding upstream 59832 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 275598 5036731 ~ 5058586 (-)
G115144 NA non-coding upstream 391919 5153052 ~ 5203873 (-)
G115157 NA non-coding upstream 466847 5227980 ~ 5243187 (-)
G115160 NA non-coding upstream 470485 5231618 ~ 5233417 (-)
AMCG00018220 NA other downstream 94939 4646147 ~ 4651641 (-)
G115020 NA other downstream 158283 4586062 ~ 4588297 (-)
G114838 NA other downstream 659549 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2098769 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2137101 2609145 ~ 2609479 (-)
G115174 NA other upstream 525253 5286386 ~ 5287873 (-)
G115183 NA other upstream 538974 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 595713 5356846 ~ 5366754 (-)
G115320 NA other upstream 1189288 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1849500 6610633 ~ 6652773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023146 mss51 coding NC_007135.7 CM002908.2 39105051 ~ 39114123 (+)