AMCG00018247


Basic Information

Item Value
gene id AMCG00018247
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5233620 ~ 5269405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018247
GAAACGGCGACGGCACCGCGTTTCGGGACTGAACGTGCTGTGAAACGCGCCCTGCGCTGTGGGGCGGGCATGGCTGCTGAGCGGCAGGTGCATTGTTAGGGGATTGGGTTTGCgtgcttatttattcattcatttatttattcacccaTCTATTTATTGTGGCGTTTTATTGCACGGTTTTTTAAAAAATGGCCAGCGACAAGCCGGAGCGCTTCGCCTTGGACGCTGGCTGCGGGAACAGAGGCGCCCGGCCGGGAAGCATCTAGAAGAACCGAGGCTGCGGCGGAGGGGAGCAGCGGATGCTCGTATGCTCTCGCAGCCATTTAAAAACAGGAGAGAAACATAACTATTATATTTTACCAGCATGATGAGGGCCGAGGCGATCCAGGGCTGAGAAAAGAGCGCAAGAAATGCGGATTTGGAAGAGGGTTGAGCATCACTTGGCCATGGGACACAGATCCATCTACTGAGAGGCAATAAAGACCAAAACAGACAGCTGAAGGGTGCGCATTGAGTGTGGAGATATAAAACCCCATAAGGTAGCATTAGAGACTCAACTCTTGCtgaattttatttcttccccctCACTGAGTCGTGCTGCACCGGGGAGCAGCAGCCTCCCCTCACCGGCCCGCCAGCATGATGGAGATCCAGATCGACGAGGTGGTCTACCAGGACGACTACGGCTCCGTGTCGGTGATGTCGGAGCGGGTGTCCGGCCTGGCCAACAGCATCTACCGCGAGTTCGAGCGGCTCATCCGCAGCTACGACGAGGAGGTGGTGAAGGAGCTCATGCCGCTGGTGGTCAACGTGCTGGAGAACCTGGACTCCGTGCTCACCGAGAACCAGGAGCATGAGGTGGAGCTGGAGCTCATCAAGGAGGACAACGAGCAGCTGCTCACCCAGTACGAGCGGGAGAAAGCGCTGCGCAAACAGGCGGAGGAGAAATTCATTGAGTTTGAGGATGCTCTGGAGGCGGAGAAGAAGGACCTGCAGACCCAGGTGGAGGTCTTGGAGCTGCAGGGGAAGCAGATGGAGCTCAAGACCAAGAATTATGCAGATCAGATTTCCCGCCTGGAGGAGCGTGAGTCCGACATGAAGAAGGAGTACAATGCTCTGCACCAGAGACACACTGAGGCCGAGGACACACGAAAAGCGGTAAAGCATTTATGTGCCGCCTTGCGCCACCCCAGCTTGCCGCTGGGACTGCAGAACACAAGCGCTGACTGGTGGACGATGATTCAGACGTACGTGGAGCACATCGAGAGGTCCAAGATGCAGCAAGTTGGGACGAACAGCCAATCGGAAGGGACCGGAAGCGGGAGAACTAGGACGGAGCGGCCACCCTCACTCTTCAACAGCACGGAGGGGATGGTACGTGGGTGTCAGGGGGGGGCTAGGATGACGCCTGGTTCTGACGTCTGGCAGGTCAGCGAACTCAGCCAGCCCTTCTCCATCTCCAGCTACAAGGATGACGAGTCGGAATCTGGGCAGTCCTCGGCGGCCGCCACCCCCAGCAGCAACGGCAGCAAGTCCAACACGCCCACCTCGTCTGTGCCCTCGGCCACCGTCACCCCCCTCAACGAGACCTTCCAGCCGATCACAGACGTCGACGTGGCCCGCGTCAACAACAAGCGCAAGGGGGTCAAGCGGCTGAGCCGGAACATGGAGGTGCAGGTCTTCCCGGAAACCAAGAGTGTCAGCATTGGGGAGCCGTGCGCAGGTGAGGGTAACCTGTGGGTGCTGATTGCAGGGATGGGCAGCAGTGACGAGTTTCCGGACATCATTGACACCCCCGACCTGGACATGGACCCCCCGTTCTACTGTGGTGGAAACAGCCCTTCCCAAGGCATCGTTAACGAAGCGTTCGGCATCAACACGGACTCTCTGTACCACGAGATCAAGGACACCAAGTCGGACATCATCGGGGACGTGGACGCGGGAGCCGAGCTGCTCGGGATGGGCAAGGAAGTGGAGAATCTTCTGACAGAGAACAAGCAACTCCTGGAGACCAAGAACGCCCTGAACATCGTGAAGAATGACCTGATTGCCAAGGTGGACGAGCTGTCCAGCGAGCAGGAGGTCCTGCGCGAGGAGCTGGAGGCAGTGCGGCAGTCCAAGACCAAGGTGGAGAGTCGGGTcaaggagctggaggaggagatgaagcgGTTGAAAGCTGAGGCCTTGGGTGCAACACAGGAATCCAAGGATGAAGGTGTGGAGGACTATTCGTCCCCGCTGCAGGACGACGTGCCCATGGCCCAGCGGCGCCGCTTCACCCGGGTGGAGATGGCTCGGGTCCTGATGGAGAGGAACCAGTACAAGGAGCGGCTGATGGAGCTGCAGGAGGCCGTGAGGTGGACGGAGATGATCAGaGCTTCCAGGGAGAGTCCTCAACTTCAAGAGAAGAAGAAATCTACCATCTGGCAGTTCTTCGCCCGTCTCTTCAGCTCCTCGGCCAGCCCACCCCCCGTCAAGCGGCCCTACACGAGCGTCAACATCCACTACAAGTCGCCCTCGCCGGCCGGTTTCTCGCAGCGCCGCAGCCACACCATGTGCCAGATCTCCACGGCCAACCGCACACTGGAGTTCTTCCCCGAGGAACTGGACAGTAACGGTGTTGCGTCTCTCCTCAGTGACTGCGCACTGTCTGCCCGGCGCGAGCAGCGGCGCGAGCAGTACCGCCAGGTCCGAGAGCATGTGCGCAGGGAAGACGGGCTCATGCAGGCCTGCGGTTGGAGCCTGCCGCCCCGTTTCAAACAGACGGGCCCTCTGCTGGAGCATTCGCAGGAGGGGCCGCAGAAGAAACCCCAGGCAAGTGAGACCGACAGAGTCACGGCATGCAATGACCGCACCCCCCAGAAGGCCTCTGTCCCTTGCGCTGCAGCAGATGAGGGGCCCGGCCGGCCCCTGAGCCCCAATGGTGGCCAAGAGGACAACCGCATGAAGAACGTCCCTGTGCCCGTGTACTGTCGCCCCCTGGTGGAGAAGGACCCCAACAGAaagCTGTGGTGTGCCGCTGGCGTGGACCTGACCGGGTGGAAGCAGGCTGAGAGCCCACTCGGCGGGCTGAAGCCCTCGTCCAGCAGCACGGACCCGCTGACGGCCGAGGGCAACGGCGAGGAGAACCAGAGCAACCACAGCTCCCCTGACAGGAAGAAGGTACGCCGCTACGCCCTCCTCACAGTGCACAGACATTATAGCCTCATTAGAGAGCCGTCCAAGGAGCAACACGAGACGGACTCTCTGTGCAGCCGCGTTTGGATCCTCACTAGCACCCACTCCGCCAGCAAGGTCGTGATCATCGACGCCAACCAGCCGGGCTCGCTCGTGGACCAGTTCAACGTCTGCAACTCCCACGTGCTCTGCATCTCCAGCGTGCCAGCGGCCAGCGAGAGCGACTACCCGGCGGGCGAGATCTTCCTGGAGCCGGGCGACGGTGGCTCGGAGGAGACGGGCGGCGTGGAGGGCATGCTGGCTGGCATCACCCTGGTGGGCTGCGCCACCCACTGCAGCGTCGTGCGCAGCAACTGCTCGTCGCGCACGGATACACCCGTGGTGGACAGGGGGCAGGGCCACGTGGCGCCGCTCCTCAACGGGAAGATCAACTCGTCTCAGTCGGCCGAAGAAGCTACCGAGGCCACCGAGGTACCGGAGCCGGTGGCCAGCCACACGGAGGGCGTgtcggcccggcccggcccctTCACAGAACACGTGTTCACAGACCCCCAGCCCACTGCAGCCGACGTGCCTCTCAGCAGGGAGCCCGGCCAGCCCAAGGAGGAGATGAGTAGTGCGTCGACCCAAGAGCCAGAGGAGGGCGGGGAGGAGCCCAGAAACGGCACCAGCGCGGCTCCCACCATGTGGCTGGGAGCCCAGAATGGCTGgctgTACGTGCACTCTGCCGTGGCCAACTGGAAGAAATGTCTGCACTCCATCAAGCTGAAGGACTCGGTGCTGAGTCTTGTACACGTGAAAGGCCGAGTCCTGGTGGCGCTGGCCGATGGTACACTCGCCATTTTCCACAGATCCGAAGATGGACAGTGGGACCTCAGCAACTACCACCTGATGGACCTGGGCCGCCCGCACCACTCCATCCGCTGCATGGCCGTGGTGCACGACAAGGTCTGGTGCGGCTACAAGAACAAGGTGCACGTCATCCAGCCCAAGACCATGCAGATCGAGAAATCCTTCGATGCCCACCCACGTAGGGAGAGCCAGGTCCGGCAGCTGGCGTGGATCGGCGACGGGGTGTGGGTGTCCATCCGCCTGGACTCCACCCTCCGGCTCTACCACGCGCTCACGCACCAGCACCTGCAGGACGTGGATATCGAGCCATACGTCAGCAAGATGCTCGGTACCGGCAAGCTGGGCTTTTCCTTCGTGCGGATCACGGCCCTCCTGATCGCAGGGAACCGCCTCTGGGTGGGGACGGGGAACGGGGTGGTCATCTCCATCCCCCTGACAGAGACTGTAGTCCTACACCGGGGACAGCTCTTGGGTCTGAGGGccaACAAGGTGTCCCCAACGTCCTCCACTGGGGTGATCCACGTGTACGCCGACGACAGCGCGGAGAAGACCAACGGCAGCTTCATCCCCTACTGCTCCATGGCTCAGGCCCAGCTCTGCTTCCACGGGCACAGGGATGCGGTCAAGTTTTTCGTGTCGGTGCCTGGTAATGTGTTGGCCACCCTGAATGGCAGTGTATTGGACAGCCCCTCGGAGAACCCTGGCTCGACGGTGCCCCCGGAGGCCGAGGCCCAGCGTCTGCAGAACGTCCTGGTGCTGAGTGGAGGGGAGGGCTACATTGACTTCCGCATTGGCGACGGGGAGGATGATGAGACGGAGGAGACCTCTGGGGACGCCCCGCAGATCAAGACCTCTCTGTCGAAGGCTGAGAGGAGCCACATCATCGTGTGGCAGGTGTCCTACATACCAGAGTGAAACGGCTTTCATCCTGCACTCCCCTCCCCACTCCGCACTCCCAACCCCCCAACAACGAcacgcccccccaccccccaggcACCACCCAGACTGCCCTGCATCTTACCAACCcgaaacagacacagacacacacacaaaaaacttgCTACAACTGAATATAACCCCTGCCCCTCAACCCCTCACTCCTCCTTCCCTCCTCCGATTCATCCCTACCTCTCTCTCAGCTCAGACCAACCTGCTGTAACTCAATAGATGCACCCTAACCTTTCACCTTCAGCTCGTTTCTTACTGCATCTCACACGGGGTCACTTCTCACTTCCCAGGCAGCCCACAAACAGGACTCCCAGTGGCTTGTAGAGGAAAGCGAAAGGCATGCAGGGCAGAACAGAAAGAGCACAGAAAGTTACAGAAAGGTAGGCCAGAGTTAGAAGATGGCGTAACCTGAAATAAAATTGCCACCGATGGTCAAGAACAGGGTGGGTTTATCGGAGAGGCCCAGCCACAGGCAGCTGACGGGGGTTGTTCTCCAGTGGCAACATCTTGGGCGAATCTGGTGAGGTCGTGGTGCCATCCGGGCGGTGCGAGGTCAATGCAAAAGGGCAGGGAAGATGTGGTCATGTGGAGTAGATGGTAGCTGTACGTAGGTGCCAATATGGAAGAGAATGTTGGAAACCAGATTGAAGGATTGTAGTGCGGATCAAGGGTTTCATCTGATCAGAAGGATCTGGTTGTGGAGGGAAATGAATGTGTTCAAGTGGGTCACAGAGGAAGGTTGGCGAGTCTTTGATACCGTCCCGTAGGCAGGTCGAGTCATTCTGTTTCGTTCACGCTGGCCTGGATGGCTTGTCCTCTCGGAACCCGTGCTGGAAACCCAAAGCAACTTGAGCCCAGGGCTGGCTTCTCCGATCTTAACGTAACCCCCATGCGTCTCTGAACCCGTCTAACTCTGATGTCAGGAACAAGAGTGTGCAGTTGTATAATAGTATTGGAAAGAGTTGGCTTtcactgtgtaaatatatatatataaatatatagagggagacagaggcgaGGCCAGTTTGTAGACCGAAACACTTCGGCGATAGTTGAGCGGACTTCGACGGAGCTGAAAAAGCAGGAAGTGATGTTGTGTACTGTTTTAAACTTCTGAACTTTGGGGACCAAGACTTCCTGCTTTCAAGGGATTTTACTCTATAACCGGCCTCTCGTGCGGGGAGTGATTGGCCAGCCTGGGCGGTTAGCTGCTGCACTCAGAGAGCCCGGGTCCTGGGACGGGGTCACACACAAGCGCTTAGTGGAGAGCACAAGGAACGAGCAAATGGTTAAATCCGGATTTTTCTATTAAACTGACTGCTTTAAACTAAGATACTCAAAGTCCAACAGCTCATATGCAAAACAATGAGTCGCTGAGCTCTTGCACTGCATCACTTCACAAATGTAGAATCGCTGATGCGTTAACGTCACAAACTGCTGACACAACCCAAGTGCAACCAATAGCTAAATCCACTTGGACACCTAGTGAATACACATTTCCAGACATTAACTCAGTCACCAGCCTGGGTATCATTGAAGTGACCAGTCAGGTTCCTCCAAGTGGCCCCCTGTGACCTGCAGTAAGATGGCTGCTGATTGGCTCATGTAAGTCCCTCGATGATTCTGCTGTGTAATGTATGTAAACTACCTTGTATGTTGTAAAGGGGCCAGGGAGTGAGGCATGCCACCAGCCTTGCCCACGAGGAGGTTTCCTGTATAGCAACTGCTGTAAGAATATCTCCCTGCTTCTCCCCCCGTGCTATGTAATAAACTCATCGGACATGGAACTCTATCTGTATGTAATA

Function

GO: NA

KEGG:

id description
K04436 MAPK8IP3, JIP3; mitogen-activated protein kinase 8 interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018247 True 6782 mRNA 0.58 32 5233620 5269405

Neighbor

gene id symbol gene type direction distance location
AMCG00018248 NA coding downstream 7945 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 21265 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 62101 5155372 ~ 5171519 (-)
AMCG00018239 NA coding downstream 78446 5149900 ~ 5155174 (-)
AMCG00018232 NA coding downstream 407607 4823825 ~ 4826013 (-)
AMCG00018245 NA coding upstream 9949 5279354 ~ 5283933 (-)
AMCG00018253 NA coding upstream 41752 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 62836 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 80233 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 339185 5608590 ~ 5612475 (-)
G115160 NA non-coding downstream 203 5231618 ~ 5233417 (-)
G115144 NA non-coding downstream 29747 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 175034 5036731 ~ 5058586 (-)
G115071 NA non-coding downstream 412209 4820965 ~ 4821411 (-)
G115037 NA non-coding downstream 553871 4679540 ~ 4679749 (-)
G115170 NA non-coding upstream 9681 5279086 ~ 5279296 (-)
G115172 NA non-coding upstream 14669 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 15540 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 22618 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 24274 5293679 ~ 5293933 (-)
AMCG00018220 NA other downstream 581979 4646147 ~ 4651641 (-)
G115020 NA other downstream 645323 4586062 ~ 4588297 (-)
G114838 NA other downstream 1146589 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2585809 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2624141 2609145 ~ 2609479 (-)
G115174 NA other upstream 16981 5286386 ~ 5287873 (-)
G115183 NA other upstream 30702 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 87441 5356846 ~ 5366754 (-)
G115320 NA other upstream 681016 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1341228 6610633 ~ 6652773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025182 mapk8ip3 coding NC_007114.7 CM002887.2 15907297 ~ 15988728 (+)
grasscarp (Ctenopharyngodon idella) CI01000035_00289404_00322769 MAPK8IP3 coding CI01000035 null 288571 ~ 323351 (+)