AMCG00018264 (rasd1,LOC107653935,LOC107720458)


Basic Information

Item Value
gene id AMCG00018264
gene name rasd1,LOC107653935,LOC107720458
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5783076 ~ 5784900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018264
CTGATGACGGGGCGCGGGAGGGGTCAGCTTTGCGCATATAAGCCCCGCAGACTCAGCCTGCAACCCAGACCAGCTCCAGCGCTGCACAGGGATTAATCAGAGCCGGCCAGCTGAGTGCCAGACAGCTCCTTCTCCACAGACAAGCTCGCAAACATGATCAAGAAAATGACACCCTCAGAGAATGAGTTTGACATCCCAGCCAAGAACTGCTACAGGATGGTGATTCTGGGCTCCACCAAAGTTGGCAAAACGGCCATCGTGTCCCGGTTTCTCAGCGGGAGGTTCGATGACCAGTACACCCCGACTATTGAGGACTTTCACAGGAAATTTTACAGCATCAGGGGAGACGTTTATCAACTGGATATTTTAGACACTTCTGGGAATCACCCCTTCCCTGCCATGAGAAGGCTTTCCATCTTAACAGGTGATGTCTTTATCCTGGTCTTCAGTCTGGACAACAAAGACTCGTTCAAGGAGGTCCAGCGCCTGAAGCAGCAGATATTCGAGACCAAATCctgtctgaaaaacaaaaccaaagagaaCATTGACGTGCCGCTGGTCATCTGCGGCAACAAATGCGACCGAGACTTCTACAGAGAGGTGCAGCGAGAAGAAATCGACCAACTCATAGCTGGAGATGACCAGTGCGCCTACTTTGAGATCTCCGCCAAAAGGAACACTAACGTGGACAAGATGTTCCAGACTCTCTTCACCATGGCCAAGCTGCCCCACGAGATGAGCCCCGACCTGCACCGCAAGGTCTCGGTGCAGTACTGCGACATGCTCCACAGGAAATCCatcaaaaacaagaaattgaAAGACGGGGACGCCTATGGGATCGTGGCACCTTTCGCCCGGCGCCCAAGCGTGCACAGTGACTTGATGTACATTAAGGAGAAGGCAATCGGGGGCGGCCAAGCCAAGGACAAAGAGAGATGTGTCATCAGCTAAGgactggacacagacacacaggagaatCCGAGACCAAGGATGTCACAGTTGTGGCGCTGAAGGTTGAAATCCGAGAAAGCTTGCTCTGCTCACCGGGGTTCAGAGATTCAAAGCCCGGCAGAAGGGCACTTTTCTCGGCGTTGAACTGGCCTGGACCGTGGGACTTCAACAGACCTTGAGGCGCAGGTTATGTTTGCAGGACTTTGTtgtacaaaacactttttttgccCATAAGTGTCAGGGCGCTGATGTGATGTGACGTGACCCAAGAGAGATGTCTCTTGAATAACATGCTGTAAAATTGCCTTCATTTGAAATCTACCTTAGTAAAGGGTGAAAGCAAAACTTCAGGGTGGCGTGCAATGCGGAACTATACATTGTTTACAAtttgttataaatgttttataacagAAAACAGCACTTGAATGTTTGTTGCAACGAGAACAAATTTTGCCAACGTTTGTTATTTATTCTTGTATGTGAGtcattttatatatgaaaaaataaaatgcataaaacta

Function

symbol description
rasd1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to several human genes including RASD1 (ras related dexamethasone induced 1).

NR:

description
PREDICTED: dexamethasone-induced Ras-related protein 1-like

GO: NA

KEGG:

id description
K07843 RASD1; RAS, dexamethasone-induced Ras-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018264 True 1472 mRNA 0.49 2 5783076 5784900

Neighbor

gene id symbol gene type direction distance location
AMCG00018262 cops3 coding downstream 37372 5741029 ~ 5745704 (-)
AMCG00018258 NA coding downstream 170601 5608590 ~ 5612475 (-)
AMCG00018250 tmem11,LOC106600685 coding downstream 428153 5349638 ~ 5354923 (-)
AMCG00018252 dhrs7b coding downstream 440092 5332241 ~ 5342984 (-)
AMCG00018253 NA coding downstream 460761 5311157 ~ 5322315 (-)
AMCG00018265 NA coding upstream 9617 5794517 ~ 5808843 (-)
AMCG00018263 NA coding upstream 96646 5881546 ~ 5886000 (-)
AMCG00018274 clec16a coding upstream 283403 6068303 ~ 6124832 (-)
AMCG00018289 NA coding upstream 343813 6128713 ~ 6155791 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding upstream 373380 6158280 ~ 6182812 (-)
G115279 NA non-coding downstream 29054 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 33033 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 34717 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 175007 5607833 ~ 5608069 (-)
G115219 NA non-coding downstream 433446 5345762 ~ 5349630 (-)
G115332 LOC100136012 non-coding upstream 261130 6046030 ~ 6046618 (-)
G115395 NA non-coding upstream 432628 6217528 ~ 6219216 (-)
G115534 NA non-coding upstream 1216902 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1949197 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1957074 7741974 ~ 7742210 (-)
AMCG00018251 natd1,LOC107745813 other downstream 416322 5356846 ~ 5366754 (-)
G115183 NA other downstream 478647 5300107 ~ 5304429 (-)
G115174 NA other downstream 495203 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1131435 4646147 ~ 4651641 (-)
G115020 NA other downstream 1194779 4586062 ~ 4588297 (-)
G115320 NA other upstream 165521 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 825733 6610633 ~ 6652773 (-)
G115581 NA other upstream 1958318 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2856996 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2881837 8666737 ~ 8676808 (-)

Expression


Co-expression Network