AMCG00018344


Basic Information

Item Value
gene id AMCG00018344
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8641896 ~ 8648807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018344
GCTTTTCCGCGGCTGCCTGTTGTGCGCGACGGCGCGCGACCGGCTGGACTGGAACCGCGCGCGCAGAAAGTGCCGCTCGTGGCGTTCGGTTTCCACGGCAACTTCAACTGCGTGTGGATGCGCGCGCTGGAGCGGCGTTTTCCCGGGAGATCCGCCGGCGCCGTGACGCGCAAACTGCAGCTGGACCAGACCGCCGCCACCAGCGTCTTCTGCACAGGGAGAGGAGCTCAGCTCGCTCGGACCCTGGGCTCTGGGATGAGTTTTCTTGAGGGCAAGGAGGACATCCTGCAAGACTGGAGGGAGAAATTCCTGAACACCTACAAGACTGGACTCATGTACTGGCCGTTTGTTCAGACAGCTCAGTGTGTCTGGCTCCAGGAC
>TU145083
CGCGCGCTGGAGCGGCGTTTTCCCGGGAGATCCGCCGGCGCCGTGACGCGCAAACTGCAGCTGGACCAGACCGCCGCCACCAGCGTCTTCTGCACAGGGAGAGGAGCTCAGCTCGCTCGGACCCTGGGCTCTGGTGGGATACAGGGATGAGTTTTCTTGAGGGCAAGGAGGACATCCTGCAAGACTGGAGGGAGAAATTCCTGAACACCTACAAGACTGGACTCATGTACTGGCCGTTTGTTCAGTGTTGGCGTTAATGAGGAAGAATATGAAGACACAGCTGGAGAAATTGGGACAACATGAATCACGTCAGATGGGCTCAGGTTTACCAGCAGAAGGATGTTACATACTCTTGTGCTAAGGTTTTTTAtgatattataattgtattatatattataagtaTACAGTATGTTCATATCAGGTGCAAATTTGCAGAATGTCAACCATTGGTATGTAATTCACTCCACTATACTAACTGTAATtctgaattaattgaattgtatttgtgtgttataTATGTAAAAGCAAGAAAGGCACAGCACAAACTGGATTGTTAGTCTTCCTCATTTGAATAGGCTGTTGTTTAATCGGCCCAGTATTAAGGTTTAAAAGTAAGTATCAATCTGTGCGGACAATAATCCTCTTAATCCTAATTATTTTAGGACTGTGCGTAATTGGGATCATTGTTCAACATACAACTAAAAATAGAGCAGCAGAGTAGACAGATTATTGAGGAAGGTGAAGCTTAGCTGCACTGAGTTGGTATAAATGTAGTATAAAGTATGAAGACAAATGACCAAGTCAATGGCACCTGGAAAAGTGCAAGATTTGCAAAGTGtaagcaaacaaaaagctgtactgtttgcagaaaaaaaaaatctgttacaaCAATTTTTTCTATTAGTAACTCATTGGAAAATAAAGTTAGGCTTACTTTGGCTTCACATATCAAATCTGTACTTcacggtttaatttattgttagaagccactttataatatttattcatCAAAACCCGACAGGGTACAACTTTGTCATTTGCTTTTTGATTTGGTGCTTTGTTTGAATATTCTTGAAGTTAATAAAAGTCTAGTGGTAGCTAACCAGTGACTgacagtatataaaaatatatgtgtttttatttgtattgttttaagatGACCAGTTTGGGGGGTTGGAAATAAGTACATACTTTCacaatctgtatttaaatgtgattttttacTTTGTAATTGAATTTGAAGCAACATATCATTCCCTAACACTGATGCATTAGCCtcagatttgtgtatttttgtttatggaaatgtaatgaaatgtaggCATGTATGGAAACTCAAAGCCCAAGGAAAACTGAGACtaattagttttgatttaaattctCTAAATTGTTGCTGTTTAATTGCTGTTTAATTCCCCATTTGATGTATGTTTCACCTCTTGGGGCTGTGATACTAAAACCGCTGTTGAACTGAAACGCACAAATCCCCTACCACAGTTGTACTACCTAAATAATAggcatacattacattttcattgtgaaCTACAGTCTTTAGCTCTGAGAACCCATTGGACATATATCCTGAAGGTAGTGGGAATGAAGAATGTCTggttcaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018344 False 381 mRNA 0.63 4 8641896 8648807
TU145083 True 1621 lncRNA 0.38 4 8642346 8648687

Neighbor

gene id symbol gene type direction distance location
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 10308 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 39162 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 100857 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 172267 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 192952 8443195 ~ 8448944 (-)
AMCG00018342 NA coding upstream 29057 8677864 ~ 8684648 (-)
AMCG00018340 LOC108274424 coding upstream 38902 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 44552 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 51604 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 175835 8824642 ~ 8905411 (-)
G115807 NA non-coding downstream 122693 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 208326 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 773270 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 799188 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 899149 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 213066 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 551993 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 832103 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 878685 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1135623 9784430 ~ 9788579 (-)
G115581 NA other downstream 868004 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1989123 6610633 ~ 6652773 (-)
G115320 NA other downstream 2690841 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3275142 5356846 ~ 5366754 (-)
G115183 NA other downstream 3337467 5300107 ~ 5304429 (-)
AMCG00018339 NA other upstream 17930 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 591005 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1125499 9774306 ~ 9779545 (-)
G116165 NA other upstream 1270239 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1471792 10120599 ~ 10136769 (-)

Expression


Co-expression Network