AMCG00018346 (LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961)


Basic Information

Item Value
gene id AMCG00018346
gene name LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8700411 ~ 8717402 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018346
TGAACCGTCTTGCTATCTCAATTTGGTTACAGACATACTTTTCTAACCAATTTGGTCATTTTGAATTATTGGTTTGCTTAGTAAGTATTATACAAATTGcacaatgtattacaattttcACGCAACTGGTCTCAAGATAAGTATTCTTTATACTATAAATTTGTTATAAAAGAAgtacacccatttttattaaaaaaaaaaaaagaaaagggttcGAACAATCGGACTAGAAGAAAATTTGCAACTACACGGTCTGGCCAAGTGTAGTTCTATACAGCGATTGCTCAAATCCATGACACTACCCGGATGACGTCAACCGAAAACTCCAAGACCCAGAAGCCTTTCGGTCAAATCTGTCGGGGATGATGGCGTCACGGTAGCCTGATGCGTGTGTGGAATTGTAGTTTATCTAACCACCCCCGTCAGTCGCTCCGAAATGGGAAACAAATGGCCGAAACACTACAGCTCCCATGGTGCAGTGCGCACGTCGCTCCCTGTGGTTGGGGAGAGTCATCGGCACACACGAGGACTCGCGTTGAGTGCTGAGTcggatctctctctctttttctggtGTCGCCGTGAGAAACCGGCTCCGTATTCTTGGAAGGGAAAAAAGGATAAAGATTTACgctgaaaagagagaaaactttttaactatattttaaagaggtggggggaaaaaataacgCGTTGCGGGGTGGTTATACAGCCAACTGCGTAGTCTTTACAAACAGTACAGTTTAAATCAAGATCCACGATGGACCCGAGAGACACTGCCCCGGATTCCTGGGAACAGGAGGACGATGTGGAGGCCCCGGTCGACGCGGAACTTCAGTCCGCCTTCATCGGGCTCAACGTGAACGCCAAGCCGTTCGTCCCCAACGTGCACGCCGCCGAGTTCGTACCGGCCTTTTTCCAGACAGGGCCTTCTGAAAGCCCCGACACTGCCGGTGCTGATACAGTGTCCGGCATGGAAGTTTCAGAAGCTGTTGCACCAGTGGAAAACGGAGAGGCGGAAATGACGACGGACGAGTCGTGGGAGCAAAAAGGTGAGCCCAATGAGGCCGAGCCAGGAGGCGGCCCCTCCGGGGATGGGGGACCTACTGAGGAGACCCAGCAGGAGAtgatggaggaggaagaggagataCCAACGCCAAAAGTGGCCCCCGCTCCACCAGATGCGCCGAAGAAGGAGCATGTGAATGTGGTTTTCATCGGGCATGTCGATGCTGGTAAATCAACAATTGGAGGACAGATCATgtATTTAACAGGAATGGTGGACAAGCGCACCCTGGAGAAATACGAAAGagaagcaaaagaaaagaacagagaAACCTGGTACCTGTCTTGGGCCTTGGACACAAACCAGGAGGAGAGGGACAAGGGGAAGACCGTTGAGGTTGGACGCGCATattttgaaacagaaaaaaagcactTTACTATTCTGGATGCCCCAGGCCACAAAAGTTTTGTCCCCAACATGATTGGAGGGGCATCGCAAGCTGACTTGGCTGTGTTGGTGATCTCAGCCAGGAAAGGGGAGTTCGAAACGGGGTTTGAGAAGGGAGGCCAAACACGAGAGCATGCCATGCTGGCAAAGACGGCAGGAGTAAAACACCTGATAGTCCTCATCAACAAAATGGATGACCCTACAGTGAACTGGAGCCTGGAGAGGTACGAGGAATGTAAAGAGAAACTAGTGCCATTTTTGAAGAAGGTTGGCTTTAACCCCaaaaaagacattcattttATGCCCTGCTCTGGACTCACAGGGGCCAACTTGAAGGAACCCGCGGATCTATGCTCTTGGTATACAGGGTTACCATTCATTCCACATCTGGACAGTCTGCCAAACTTTAACAGATCAAGCAATGGACCAGTCAGATTACCGATCGTAGACAAATATAAGGATATGGGCACTGTGATCCTGGGCAAGCTGGAGTCTGGATCTATCTGCAAAGCGCAGCAGCTCGTGATGATGCCAAACAAGCACACTGTGGAGGTCCTGAGCCTGCTCTCGGACGATGTGGAGACAGAGGCCGCCGACCCCGGGGAGAACCTGAAGCTGCGGCTGAAAGGCATCGAGGAGGAGGAGATCCTGCCCGGCTTCATCCTCTGCAATGCCGAGAACCTTTGCCACTCCGGACGCACCTTTGACGCCCAGATTGTCATCATTGAACACAAATCCATCATCTGCCCAGGTTACAACGCAGTCCTACACATCCATACCTGCATTGAAGAAGTCCAAATTTCAGCCTTAATCTGCCTGGTAGACAAAAAGAGCGGAGAGAAGAGTAAGACGCGACCTCGCTTTGTGAAACAAGACCAAGTGTGTATCGCCCGCCTGCGAACTGCCGACACCATCTGCCTTGAGACCTTCAAAGATTTCCCTCAGATGGGTCGATTCACCTTACGAGATGAAGgTAAGACCATCGCGATTGGCAAGGTCTTGAAGCTGGTACCAGAGAAGGACTAAGGGGGCTCTGTGGATGCCTGGCGTAGTTGACTGTGATGGAAGTGGACTCGGCAGCAGCCTGCTTCTCACCgccttcttctcctctctccctcctggccgTCGAAGACAAATTTAAAACCAACTTTAAGACAAACTTCTCAAAGTGAAAGATGAATCagtttttaagaaaaaataaaataaaaaataaaacgagTCCACATATGTCAGCTTTCTCATATTGAGAGCTCAGCTATGCCATTTGTTAGTCCCTTTCACCCCTGTTATACAATTActatcaaaacacaaaataaaagcaagattGCATATTTCTCTTCCAAATTTTTTGCTTCCTTCAGAGAGAAAGTGGCAACAGCTACCATAACAGATGTGGACCGGGTTGCTtggaataaaaagagaaaaataaaataaaatacaagaaataactAAAACACCTTGAAACCAAAATGTTAATATCCTGGTTGTACATGTCTCCCTTTGCTTATATCAAAATTGGTTTCTCTACACAAGAAGCTCGTGCCGAGTGTGCGAGCGTGTTCACATTATTAAAGCAACAACAGTGACAATaaactattaaattaaaaaaata

Function

NR:

description
PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03267 ERF3, GSPT; peptide chain release factor subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018346 True 3062 mRNA 0.47 14 8700411 8717402

Neighbor

gene id symbol gene type direction distance location
AMCG00018347 NA coding downstream 1478 8693359 ~ 8698933 (-)
AMCG00018340 LOC108274424 coding downstream 12181 8687709 ~ 8688230 (-)
AMCG00018342 NA coding downstream 15763 8677864 ~ 8684648 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 68823 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 97677 8597093 ~ 8602734 (-)
AMCG00018353 NA coding upstream 107240 8824642 ~ 8905411 (-)
AMCG00018352 NA coding upstream 192345 8909747 ~ 8916027 (-)
AMCG00018362 NA coding upstream 473362 9190764 ~ 9192941 (-)
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding upstream 476636 9194038 ~ 9199468 (-)
AMCG00018361 cdip1,LOC100712532,LOC103374307 coding upstream 490135 9207537 ~ 9217538 (-)
G115807 NA non-coding downstream 181208 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 266841 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 831785 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 857703 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 957664 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 144471 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 483398 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 763508 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 810090 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1067028 9784430 ~ 9788579 (-)
AMCG00018339 NA other downstream 23603 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 51604 8641896 ~ 8648807 (-)
G115581 NA other downstream 926519 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2047638 6610633 ~ 6652773 (-)
G115320 NA other downstream 2749356 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 522410 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1056904 9774306 ~ 9779545 (-)
G116165 NA other upstream 1201644 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1403197 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1585652 10303054 ~ 10332982 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025569 gspt1l coding NC_007114.7 CM002887.2 36646054 ~ 36664310 (+)