AMCG00018341 (clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942)


Basic Information

Item Value
gene id AMCG00018341
gene name clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8625877 ~ 8631588 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018341
ATGTGTgaccacctctctctccctctcactcctgCAGCCCAGCCAGATGTGGTGTCCATGGCCGAGAGCACCATGTCTCCTGATGAGATCGAGGTGGAGATGGTCCGAATCCAGAGGCTCCGCGAGGTTCTGGTGCGACGCGAGTCCGAGCTGCGCTTCATGATGGACGATATCCAGCTCTGCAAAGACATCATGAGCCTGAAGCAGGAGCTGAGGAAGGTGGTGGCAGTGCCAGATAAGGACAAGACCAAGAAGCACAGACAGAAGGAGGAGGAATTGATCCTGAAAATCCATAAACTGGTCCAGAAGAGGGATTTCCTGGTGGACGATGCGGAGGTGGAGAGATTAAGGGAGCGCGAGGAGGACAAGGAAATGGCAGACTTCCTGAGGCTGAAGCTGATGCCACTAGAGATGCTGACCAAAGTGACCGAGACCCCAGCCAAGCAGAAGAAGTCCATTCCCGAGCCACCACCCAACAAGCCCTCCTTCGCCAAGTCTGGGGTCGCCATTATCAAAGACTGCTGTGGGGCCACCCAGTGTGCCATCATGTAA

Function

NR:

description
uncharacterized protein C16orf45 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018341 True 552 mRNA 0.56 5 8625877 8631588

Neighbor

gene id symbol gene type direction distance location
AMCG00018343 NA coding downstream 23143 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 84838 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 156248 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 176933 8443195 ~ 8448944 (-)
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding downstream 202975 8409902 ~ 8422902 (-)
AMCG00018342 NA coding upstream 46276 8677864 ~ 8684648 (-)
AMCG00018340 LOC108274424 coding upstream 56121 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 61771 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 68823 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 193054 8824642 ~ 8905411 (-)
G115807 NA non-coding downstream 106674 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 192307 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 757251 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 783169 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 883130 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 230285 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 569212 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 849322 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 895904 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1152842 9784430 ~ 9788579 (-)
G115581 NA other downstream 851985 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1973104 6610633 ~ 6652773 (-)
G115320 NA other downstream 2674822 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3259123 5356846 ~ 5366754 (-)
G115183 NA other downstream 3321448 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 10308 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 35149 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 608224 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1142718 9774306 ~ 9779545 (-)
G116165 NA other upstream 1287458 9919046 ~ 9924582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032492 BMERB1 coding NC_007117.7 CM002890.2 42500 ~ 48311 (-)