AMCG00018424 (tecpr1,LOC102784946,LOC103372311)


Basic Information

Item Value
gene id AMCG00018424
gene name tecpr1,LOC102784946,LOC103372311
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10303054 ~ 10332982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018424
atgacaaaggGAATGGGACACAGTGTTAATCTGACGGCGGTTCTCTGCAAAACAGTGACACCCTGGCTGACCAATCAGAAGCGGAATGTCAGCCGAGCATGGCGCGAAGTGGCCAATCAGAGTGGAGGGCCAATGACTTCCGGGTCTGCCATGCCAGTCAGCCTGCTGTGGGCAGTGGATGTGTACGGGCGTGTGTACAGTCTGTCCACTGCTGGCCAGTACTGGGAGCTGTGTAAGGATGCCCACCTGGAGTTCAAGCGCGTGACAGCAGTGGAGCAGTGCTGCTGGGGCATCGCCTGTGACCATCAGATCTACCTATATGTGCACTCCAGCGACGTGCCCATCCGCTACCAGGAGGAGACCTATGAGAATCAGAGGTGGAACCCTGTGGATGGGTTCTGCGAGAGGCTGTTGCCAAGCGACCGTTGGCAGTGGAGTGATGTCACCGGTCTGAAACACCAGCCTTTGGATGGGTTTGAGCTGTCCTCTGAGCACTGGGAGTGGGAGGCTGACTGGCGATGGATCCGATACAGGAGGTATAAATCCCGGGACTCCTGGGCCAAGATACCCTCAGGGGAGACGGGGCCGCTGCCAGACCCCTTCAATGACATCAGCTGTGGTGGCTGGGAGATTAGCGAGGATCCGCGCAGCCGACTCTCTCTGTGGGCCGTGTCGCTGCAAGGCAAGGTGTGGTTCAGGGACGGCATCTGCCACCACAATCCGGAGGGCACCAGCTGGGAGGAGGTCATGACCCCGGGGGAAGTGGTCCAGATCAGCTGTGGGCCGGGGGATCTGGTCTGGGCTGTGCTGTGGGAGGGGCAGTTACTGGTCAGAGAGGGCATCGGACGGGACAACCCCAAAGGCTCCTCTTGGGTGGTGGTGGACGCCCCAAGCCCAGAGGTGGGGGCCATTCATGTAGCAGTGGGTGTCAACGTGGTGTGGGCCGTCAGCAAGGACCGCAAAGTGTGGTTCAGGCGGGGCGTGAACTCCCACAATCCCTGTGGCTCGGGCTGGATCGGCATGGTGGGCGAGATGGTGATGGTGAATGTGGGGCTCAATGACCAGGTGTGGGCTGTGAGCTGTGAGGACCGCGCCGTGTGTTTCCGGCAGGGCGTGACGGCCAGCGAGCTCAGTGGGAAGGCCTGGAAGCCGGTGTCTGTGCCCCGGGATGGAGACCGCTCCCACTCCGGCAGCGCCAGCAGCCTGGCCAGTGCCGGCTGTTTCTTTGGGGGCGAGGTCCGGGTGCAGTCCCAGGGCTCGGTGATGAGCGACACCGAGTCCTCCTCAGACACGGAGCGGTCAGCCCAGGCAGTGCAACCAGCGGCCCAGCCCCCCCCCTCGGAGCAGGGTGAGACCCCCCACGCCCACATCCCCAAGGTGACCAGCGACAGCTTCATCTCAGAGCTGGTCTCTGACAAGGACAGCCCTCTGGGACCAGGTGGGGCGGGCCCGACCATTGTAGAAGAGAGACCGGGAGCAGGCGGCAGCCCCCCCGACAAGGAAGGCCAACTCCAGACCCTGGTGCTCTCCCCCAGCAAGGAGGGCAGCCGAGACCCCCAGTGGAGCAACGTGGACCTTGAGGAAGCGCAGACACACCTGGCCGTCGCCTCGGCCACAGACCCGGCAGAGACCTCCAGTCTGTCCTCCATCGCCACCTACAATTTTGGCCTGGAGGGGCCCTACGGGGCAGACGAGCATCCTCTGTGGGCCTGGGTGAGCGGCGGGGGGTGTGCTGTGGACTCCCATTCGCAACTCAACTGGTTCAATTCCACCACAGTCCTGGTCAGTGTATTAAAGGCTTTGTTCTTTGCTGCCCCCCCCGCCTGCCCCTCTGAACAGTCTGTGTGGGTGAAGAAGGGGAACATGCAGTGGTGGAGGGACTGGAAGCCCCACAAATGGATCGACGTGCGCTTTGCCCTGGAGCAATTTTCCGGCACCGAGGGCAACAAAGATGGCATTCTGTTCATCTACTACACCTTCAACGACGAGAAGAAGCTGGCCTTACTGAGCGTGTCCTGCTGTGACTCCCGGAGGATCCAGGGCCCCCCCTCCAAACAGGCAATCTGGTCCACCACCTGCATGGGAGATGTCTTTGTCAGCGAGCCCCTGCCCAGCCTGGAGGCCTCGCCCTACCCCATGCCCTGCGATCAGATGTTTTGGAGGCAGATCGGAGGGCACCTGCGCTTAGTGGAGTGTAACAGCCTGGGCGTCGTGTGGGGCATCGGGTTCGACCACACGGCCTGGGTGTATACAGGCGGCTATGGGGGAGGTTTCTTCCAGGGGCTGGCCAGCAGCACGGACAATATCCATACCCAGACTGATGTCAAGAGTGTGTACATCTATGAAAATCAGCGCTGGAATCCTGTAACTGGCTACAGCAACAGGGGCCTGCCCACCGACCGGTACATGTGGAGCGATGCATCGGGCTTGCAGGAGTGCACCAAAACCAACACCAAGCCTCCTTCCCCTCAATGGACCTGGGTGTCCGAGTGGACAGTGGACTACAGTGTGTCTGGCGGCACGGACAGAGAGGGCTGGCAGTATGCTGCAGATTTTCCAGcGAAGTGTAAGATCACAACGACAGGCCCATGGAAGGAGGTCATGCCCATCACACTGCTAGATGTCACCATCCTGCCCTGCTCGGCCCACAGCAGCCTGGATCAGGTGTCCCTCTGGGCCATCAGCAGCAAGGGCGATGTCCTGTGTCGTCTCGGCGTCACCCCTCAGAGCCCAGCGGGGACTTCCTGGCTCCACGTAGGGACAGACCAGCCTTTTAAATCCATCTCCATTGGCGGTGGCTACCAGGTGTGGGCCATCGCCAGGGATGGCTCTGCTTTCTACCGGGGCTCAGTCTCTGCCCAGAACCCTGCAGGAGACTGCTGGTACCACATCCCCTCCCCGCCCCGGCAGAAGCTGAAGCAGGTGTCGGTGGGGCGCACGTCAGTGTACACTGTGGACGAGAATGGTAACCTCTGGTACAGGCATGGACTCACCCCCAGCTATCCCCAGGGCTCCTCCTGGGAGCACATCTCCAACAACGTGCGCAAGGTCTCCGTGGGCCCCCTGGACCAGGTCTGGGTCATCGCAGACAAAGTCCAGGGCAGTCACAGTCTGAGCTGCGGCACTGTCTGTCACCGCGTCGGTGTGCAGCCCATGGAGCCCAAGGGACAGTCCTGGGACTATGGAATAGGAGGCGGCTGGGACTACATCTCCATAAGGGCCAACTCCCAGGAAGCTCCCAGGATTGTGATCCCCTCAGCAGGGGAGAACTCTGCAGGCAGGCCCAGCGCGCCCCCTCCGCCAGTCAGCAGCAGGAGCCCGCTGCTCCTCAGAGACCAAGAGGAGATGAACGGAAACGCAGTGAGCTGTTGAGAACCCACACTGTCTCTAGTCCTATAGTAatgtcccccctcctctctgggcagcttTCCAAGGTCTGTTTGGTTGTCACTGCTGTTGAATCTATCTTTTGatcctgttctttttctttcattcctttCTCCACTGTCTTGCCactctcctccttcctcctaTTTTCCcaattttttgtgttttttttcatttcttttatttcaccatttcCTTGATGGAGAGACTGAAGTAacttttaaaaagttgttttacTCCATAATTTTCAGTTTGTGGCATGGcattgagttttgtttttgttttgcggTCTTAAGCGATGAACTACCTGTTTATGTATTGACTTTGTGTCCTCTATACGTGGATATCGTATTTAACTTTGCACACTACTTGTTAAATACCTTGGCTAGCTAAATGCTAGACCTACAATCATGTGACAAATACATTGTAGCAGCAAAAAGCAGAGTCGCTCCCTTCAAATCTCATACCCAAATCTGTCCAATACCAGCTACGAAATATAGCGATTTCCTGATGGTCAAATGGAGTGCAACTGGGAGATTGTAAAGACTTCATTCCACGTCAAtgatattaaatgttaaaagtatttaatgtgTACCGCACACAAAATAAGCCCCACGTTATCCATATTTGGCTTTTCAAGGCAACATAATGTTTGCTATGAGGAAACTGGGCACTTTAGGCCTGGCGGGGCTGGTACACGGACCAAGGACACAATCTGTTTTGTTCAGAGTCATCCTTTTGCATTGACTTAGTAAGTTGCCTTGACGCCAATCACGTGTGCGATCTCCCTCCAGCTGCTCCTGACTGTTCGTTATATACTGAGTGTTGGCTGGAGGGCATTTAAACTGTGACAATCCTCTCTCATTCCAGCtttttgtgggtttgttttaaGCAGagaaacttttaattttaattttaaatctctctctccatcctcctTGATGGCACATTGAAGCCAAGGGAGCACAGCGCTTATTCTTGCCACCATCATTCAGAAACGGTCTACTGCGAAAAATTCTCAGTCTCACAAAGTGGGAGATAAATAGTCCTGCTTTGAGAAATTACACAGgtgttttatcttattttattccGCCCTTAATgggaaaataatgaaagcagCTTCAGGACTGTTCTTATCTGATATGACGATCATACGTGTTGCAAATGACGCAGCTCTGGCTGCACCTGGGGAATGCAAAGACAGTGGCAGTACGTCACTGGCAACAGATATTTAGCTCTCCTGTCTCCTTCAGTGATGGCATATGGGGACCCTGTGCTCCCTGCAAGTATGTTTCAGTCCATGAAAGTACAGGCTTGTCTTCAAGTCTCGATTTAGAGAGGGAATAGCTTTGTGCATGAAATTCTCATTGATTCATTTTGTAACCAAAGTGTTAAAGTGCGGAGAAAAGACAAAGGCAGAAAATGTATATCAATCGGAATATTCACTTTTgtcttttcaattttatttattattgagcCCCCCATGACTTTATTGGTCTCGTGCATTTCTGGTTGAGGCTGCCAAGGACAAAGATGCTGCTCTTATTCTCCATAGACACTTAAGTGCTTTGATCATAGTTGTGTGATCGGCAAAGGGTGTAGCTTTGGAAGGGTTGCACCGTGGCTGTGCAATAGGTGTGTGTGGTGGGAGAAGCTGGCGGTTCGAATGGTACTGGGGAAGGTGGAGTGACATGTGTGCCCGTGGGCTTTGTGTAGCTACAGGAAACcccctttctgtttctctcagGAATCCAGCTGTGGACCCCACTGCAAAGCCCTCTGaatgttcatatttaatggTATATGTTTGCATATAGAAGAAAAAGGCTCTATTAAATGTTTCAAGGGTTTTTTAAGGGAATTTTGATTCAGACTTATTTTTGGGGttattgtgatatattgttaTATGACATAAAAGACTGagaccacccccaccccccggcACGATTATGTTCTTACCAATGCAATTTGATcgtatacaatattttaattgtaagatGACCTTAACGGCCAACTGAAACCATAGAATTAGGATGTGTGTTTCAAACATTAAGAAATAGACGAAGAAATAAGaccatttgtttgtgtatatggATCAACTAGGTGAGTTTAAATCCACAATCATGAGTGACCATTGTGACAATTAATTTTGGGGGCTGCCTATGTTGTAcagtatactgtatttattatattagaGATGTGGATAGCAGTTACATGTTCCTCTCACCCGTCATGCATCTATATAACATCTGTAAACCCTAAATAGTTTATCGGTGATGGACTCGATGGAATTAGGGTTGAATATCAATTTTACCAGGttgtttcatattaattaaataaattagtgaTTAATTGAAACTATGACATtccaaataattgtaaaatgtgaacaatagagtttttgtgtttggttttatgtttatttttatttttttaaacaatatcgAAATGGTTTTCAAGACCAAGACtgttacgtgtgtgtgtatgtatgtatatatatatatatgtatgtatatatatatatatatatatttatatatatatatatatatatatgataaaaacaATTTAGAAACCACTACT
>TU145658
AGGAAGTGTAAGATCACAACGACAGGCCCATGGAAGGAGGTCATGCCCATCACACTGCTAGATGTCACCATCCTGCCCTGCTCGGCCCACAGCAGCCTGGATCAGGTGTCCCTCTGGGCCATCAGCAGCAAGGGCGATGTCCTGTGTCGTCTCGGCGTCACCCCTCAGAGCCCAGCGGGGACTTCCTGGCTCCACGTAGGGACAGACCAGCCTTTTAAATCCATCTCCATTGGCGGTGGCTACCAGGTGTGGGCCATCGCCAGGGATGGCTCTGCTTTCTACCGGGGCTCAGTCTCTGCCCAGAACCCTGCAGGAGACTGCTGGTACCACATCCCCTCCCCGCCCCGGCAGAAGCTGAAGCAGGTGTCGGTGGGGCGCACGTCAGTGTACACTGTGGACGAGAATGGTAACCTCTGGTACAGGCATGGACTCACCCCCAGCTATCCCCAGGGCTCCTCCTGGGAGCACATCTCCAACAACGTGCGCAAGGTCTCCGTGGGCCCCCTGGACCAGGTGATTGCTGGCTCTCG

Function

symbol description
tecpr1 Enables phosphatidylinositol-3-phosphate binding activity. Involved in autophagosome maturation. Located in autophagosome membrane; lysosomal membrane; and nucleoplasm.

GO: NA

KEGG:

id description
K17988 TECPR1; tectonin beta-propeller repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018424 True 5970 mRNA 0.51 22 10303054 10332982
TU145658 False 530 TUCP 0.62 4 10307590 10309195

Neighbor

gene id symbol gene type direction distance location
AMCG00018420 NA coding downstream 71853 10223672 ~ 10231201 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding downstream 84566 10202779 ~ 10218488 (-)
AMCG00018421 pvalb8,LOC103030409,LOC108412252,LOC103372314,LOC107548708,LOC107691229,LOC103141687,LOC107724728 coding downstream 104649 10196209 ~ 10198405 (-)
AMCG00018418 ccz1,LOC103028980 coding downstream 113696 10174420 ~ 10189358 (-)
AMCG00018417 NA coding downstream 152545 10147532 ~ 10150509 (-)
AMCG00018427 NA coding upstream 9160 10342142 ~ 10366255 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding upstream 44311 10377293 ~ 10384857 (-)
AMCG00018430 NA coding upstream 152191 10485173 ~ 10492963 (-)
AMCG00018439 tom1l2 coding upstream 758314 11091296 ~ 11118823 (-)
AMCG00018438 atpaf2,LOC102781490 coding upstream 807107 11140089 ~ 11142854 (-)
G116256 NA non-coding downstream 133432 10169248 ~ 10169622 (-)
G116255 NA non-coding downstream 139532 10163278 ~ 10163522 (-)
G116236 NA non-coding downstream 158455 10143425 ~ 10144599 (-)
G116136 NA non-coding downstream 514475 9784430 ~ 9788579 (-)
G116065 NA non-coding downstream 775318 9527492 ~ 9527736 (-)
G116352 NA non-coding upstream 276036 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 405569 10738551 ~ 10739008 (-)
G116365 NA non-coding upstream 637898 10970880 ~ 10971087 (-)
G116367 NA non-coding upstream 640113 10973095 ~ 10973307 (-)
G116368 NA non-coding upstream 644240 10977222 ~ 10979678 (-)
AMCG00018416 usp42 other downstream 166285 10120599 ~ 10136769 (-)
G116165 NA other downstream 378472 9919046 ~ 9924582 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 523509 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 1044852 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1626246 8666737 ~ 8676808 (-)
G116306 NA other upstream 2219 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 27147 10360129 ~ 10385216 (-)
AMCG00018431 trrap other upstream 229572 10562554 ~ 10580105 (-)
AMCG00018437 srebf1,LOC107713935 other upstream 728646 11061628 ~ 11083780 (-)
AMCG00018440 NA other upstream 755192 11088174 ~ 11146940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005292 tecpr1a coding NC_007123.7 CM002896.2 17794284 ~ 17810543 (-)
grasscarp (Ctenopharyngodon idella) CI01000351_01763087_01803479 NA coding CI01000351 null 1762646 ~ 1805572 (-)