AMCG00018418 (ccz1,LOC103028980)


Basic Information

Item Value
gene id AMCG00018418
gene name ccz1,LOC103028980
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10174420 ~ 10189358 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018418
TTTTACTGCCGCACTCAGGTACCCAGCTGTCAAAAAAGGAGGAAGGATGTGTTATTTTGTCGCttgatttgtatatatatatatatttttaaacacaccCGCTTGTTTACTTGATATGCCGTGAGAGTCACAAGGCATGCCCACCAGGATTAGAGCAAGTAAAAACTGCAGAAGACCACACTAATGCTGATGATCAGTCCAAGAATGGCCACAGGGATTCAAGAGAAACAGTATGCGCCGACACTGTTGAATTTTTTTGTCTACAACCCGAAATTCGGTTCCCGGGAAGGAGAGGAAGAAAAGAAGATCCTATTTTACCACCCCAGCGAGGTGGAGAAGAATGAGAAAATCCGCAACGTGGGGCTGTGTGAAGCCATCGTACAGTTTACAAGaACCTTCTGCCCCACGAAACCAGCCAAGTCTCTACACACCCAGAAGAACAGGCAGTTTTTCTACGAAGCCGAAGATAACTTCTGGATGGTTATGGTGGTACGAAATCCAATGGTGGAGAAAACCAGCAAGGAGGGGAAGCCTACTGTGGAGTACCAGGAAGAAGAAATCCTTGACACTGTTTACGGGGCAGTATTACAGCAGTGCTACAACATGTACAAGCTCTTCAACGGAACCTTTAGCCGATCGATGGAGGCCGGCGGAGTGGAGCTGCTCATACAGAGACTGGAGAAGTTCTTCTACAGGTATCTGCAAACACTACACCTCCAGTCCTGTGACTTGCTGGATGTCTTTGGGGGCATCAGTTTCTTCCCTCTGGACAAAATGACCTATCTGAAGATCCAGTCCTTTGTGAATAGGGTGGAGGAGAACCACAGCCTGATCAAGTACACTGCCTTCCTCTACAACGACCAGCTCATCTGGAGTGGGCTGGAACAAGACGACATGAGGATATTGTATAAGTACCTGACGACATCTTTGTTTCCTCGACACTCTGAGCCTGAGCTGGCTGGAAGAGACTCCCCCATGAGGCCCGAAGTGGCTGGAAACCTGCTGCACTATGGAAGATTTCTGACAGGACCATCCAACTTAAAAGACCCTGAGGCAAAATTTAGATTTCCCAAAATATTTGTGAACACGGAGGAGAGTTATGAAGAACTGCACTTGATAGTTTACAAGGCCATGAGTGCGGCCGTGTGCTTTATGATCAGTGCGTCCGTGGAGCTGACCAGAGAGTTCTGCGAGCAGCTGGATGGTCTGGTCGGCCCCCAGCTCACCCTGCTGGCATCGGACATCTGTGAGCAGTACAACATCAACCGCAGGATATCCGGGCCAGAGAAGGAGCCCCAGTTCAAGTTCATCTACTTCAACCACATGAACCTGGCCGAGAAGAGCACCATCCACATGCGTAAGACCGCAAGCGTGTCCCTCACCTCCGTGCACCCCGACCTCATGAAGATCCTCGGAGACATCAACACCGACTTCGCCCGGGTCGATGAGGATGAGGAGATCATTGTAAAGGCGATGACTGACTACTGGGTTGTGGGCAAGAAGTCTGACCAGAGAGAACTGTATGTCATTCTGAATCAGAAAAATGCCaacttaattgaagtcaatgAAGAAGTGAAGAGACTCTGTGCTACACAattcaataatattttctttttggattGAAAAGGGGAAGTATGATTGAAGCAGATGACTTTAAAGATTTATGGACTATGTTTCTACTACACTGTTTAAAAACTGTCACTTATGCTGATTACTAATGACAGCATAATTTGTAATGCAATAAttgcattgtaaaaaataattcagttgtgtaatttttcacatcatGCAACTTTTAGAGTTTTATTTATCCAGTAAATTGGCTTTCATtcctgtaattaaatgtaatatcaagattttactgtaaattaaatattagcttccatttttttattttcaaaaataaatgtatataccgtatataaatatatattggtgGCTTGAAAAGGTTATAATGAATTATTTGTgaacgttttttgtttgttagtttgtttgtttgtttttttaagatcaCAAAATTACCTAAAATGCAGGACATGCGTGACCCTTCTCTTTCTTTGGATATTTCTTTATGTCCTGGGTTAGTGGGTATGCCATCATGTCAGCTGTGTCTGCTTTGGAAACAACCACctgtactttaaataaaaagagaccTAATTTTCATTCATA

Function

symbol description
ccz1 Predicted to be involved in vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to several human genes including CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated).

NR:

description
vacuolar fusion protein CCZ1 homolog

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018418 True 2169 mRNA 0.43 17 10174420 10189358

Neighbor

gene id symbol gene type direction distance location
AMCG00018417 NA coding downstream 23911 10147532 ~ 10150509 (-)
AMCG00018410 rac1a,rac1,LOC105026138,LOC107569188,LOC107596579,LOC106601744,LOC108437155 coding downstream 132904 10029502 ~ 10041516 (-)
AMCG00018408 NA coding downstream 159527 10004233 ~ 10014893 (-)
AMCG00018409 NA coding downstream 172270 9986174 ~ 10002150 (-)
AMCG00018404 kdelr2,LOC103354828,LOC102232388,LOC100710456,LOC107091462,LOC104935524 coding downstream 193424 9973285 ~ 9980996 (-)
AMCG00018421 pvalb8,LOC103030409,LOC108412252,LOC103372314,LOC107548708,LOC107691229,LOC103141687,LOC107724728 coding upstream 6851 10196209 ~ 10198405 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding upstream 13421 10202779 ~ 10218488 (-)
AMCG00018420 NA coding upstream 34314 10223672 ~ 10231201 (-)
AMCG00018427 NA coding upstream 152784 10342142 ~ 10366255 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding upstream 187935 10377293 ~ 10384857 (-)
G116256 NA non-coding downstream 4798 10169248 ~ 10169622 (-)
G116255 NA non-coding downstream 10898 10163278 ~ 10163522 (-)
G116236 NA non-coding downstream 29821 10143425 ~ 10144599 (-)
G116136 NA non-coding downstream 385841 9784430 ~ 9788579 (-)
G116065 NA non-coding downstream 646684 9527492 ~ 9527736 (-)
G116352 NA non-coding upstream 419660 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 549193 10738551 ~ 10739008 (-)
G116365 NA non-coding upstream 781522 10970880 ~ 10971087 (-)
G116367 NA non-coding upstream 783737 10973095 ~ 10973307 (-)
G116368 NA non-coding upstream 787864 10977222 ~ 10979678 (-)
AMCG00018416 usp42 other downstream 37651 10120599 ~ 10136769 (-)
G116165 NA other downstream 249838 9919046 ~ 9924582 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 394875 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 916218 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1497612 8666737 ~ 8676808 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 113696 10303054 ~ 10332982 (-)
G116306 NA other upstream 145843 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 170771 10360129 ~ 10385216 (-)
AMCG00018431 trrap other upstream 373196 10562554 ~ 10580105 (-)
AMCG00018437 srebf1,LOC107713935 other upstream 872270 11061628 ~ 11083780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005286 ccz1 coding NC_007123.7 CM002896.2 17657224 ~ 17686404 (-)