AMCG00018420


Basic Information

Item Value
gene id AMCG00018420
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10223672 ~ 10231201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018420
ATGGCCATGGCTGACCTGTTCTCTTTAGCGGATATCCACACTGCCATCAGCTTATGCCAAGCCGACTCCTTCAACCACAAAGCTTTCTTCGCTGCTGTCGGTCTGTCCAGGAAGTCCCAGGACGAGGTTAAGAAGGTCTTTAAGATCCTAGACCAGAACAACAGCGGCTTCATCGAGGAAGAGGAGCTACAaactgTCAAGAAGACCATGGCTTTAGCCGGCCAGCTGAGAGAAGAGGACATCACCACTGCTCTTCAGAGCTGCCAAGGTAAGCAAGATGGGAGCGAGGGAGCTCCCCGCCACAGCCTCACACACGCCCCAGGAGGAGctGCTGGCTCCTTCAATCACAAGACATTCTTCGCCCAGGTCGGACTCGCCAACAAATCTGCCGCCTACGCAGAGAAAGTGTTCCAAATCCTGGACCAGGACCGGACCGGATTCATTGAGGAGGATGAGCTGAAAACATTTCTGCAGAACTTCTCTGCCGGCGCCAGAGTTCTGACTGATGCCGAGACCAAGGCCTTCCTCGCCGCTGCTGACTCTGATGGCGACGGCAAGATTGGAGCTGATGGTAAAAAGAAAGAAGCCCATTAA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018420 True 594 mRNA 0.54 6 10223672 10231201

Neighbor

gene id symbol gene type direction distance location
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding downstream 5184 10202779 ~ 10218488 (-)
AMCG00018421 pvalb8,LOC103030409,LOC108412252,LOC103372314,LOC107548708,LOC107691229,LOC103141687,LOC107724728 coding downstream 25267 10196209 ~ 10198405 (-)
AMCG00018418 ccz1,LOC103028980 coding downstream 34314 10174420 ~ 10189358 (-)
AMCG00018417 NA coding downstream 73163 10147532 ~ 10150509 (-)
AMCG00018410 rac1a,rac1,LOC105026138,LOC107569188,LOC107596579,LOC106601744,LOC108437155 coding downstream 182156 10029502 ~ 10041516 (-)
AMCG00018427 NA coding upstream 110941 10342142 ~ 10366255 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding upstream 146092 10377293 ~ 10384857 (-)
AMCG00018430 NA coding upstream 253972 10485173 ~ 10492963 (-)
AMCG00018439 tom1l2 coding upstream 860095 11091296 ~ 11118823 (-)
AMCG00018438 atpaf2,LOC102781490 coding upstream 908888 11140089 ~ 11142854 (-)
G116256 NA non-coding downstream 54050 10169248 ~ 10169622 (-)
G116255 NA non-coding downstream 60150 10163278 ~ 10163522 (-)
G116236 NA non-coding downstream 79073 10143425 ~ 10144599 (-)
G116136 NA non-coding downstream 435093 9784430 ~ 9788579 (-)
G116065 NA non-coding downstream 695936 9527492 ~ 9527736 (-)
G116352 NA non-coding upstream 377817 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 507350 10738551 ~ 10739008 (-)
G116365 NA non-coding upstream 739679 10970880 ~ 10971087 (-)
G116367 NA non-coding upstream 741894 10973095 ~ 10973307 (-)
G116368 NA non-coding upstream 746021 10977222 ~ 10979678 (-)
AMCG00018416 usp42 other downstream 86903 10120599 ~ 10136769 (-)
G116165 NA other downstream 299090 9919046 ~ 9924582 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 444127 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 965470 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1546864 8666737 ~ 8676808 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 71853 10303054 ~ 10332982 (-)
G116306 NA other upstream 104000 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 128928 10360129 ~ 10385216 (-)
AMCG00018431 trrap other upstream 331353 10562554 ~ 10580105 (-)
AMCG00018437 srebf1,LOC107713935 other upstream 830427 11061628 ~ 11083780 (-)

Expression


Co-expression Network