AMCG00018439 (tom1l2)


Basic Information

Item Value
gene id AMCG00018439
gene name tom1l2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11091296 ~ 11118823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018439
ATGTATGtggtgcctgtgtgtgtttgtttgtttgtttgtttacttaaatatatatttgctccTCCCtcttccacccccccccctccagaaAAAGCTACGGACGGCTCCCTCCAGAGCGAGGACTGGACTTTAAACATGGAGATCTGTGACATCATCAATGAGACGGAGGAAGGTCCCAAGGATGCCATCAGGGCAGTGAAGAAGAGGCTGAACGGAAACAGGAATTATCGGGAAGTGATGCTGGCACTGACaGTTCTGGAGACCTGTGTGAAAAACTGTGGCCATCGTTTCCATGTTTTGGTAGCCAATCGGGACTTTATCGATGGTGTCCTCGTTAAGATCATCTCTCCCAAGAGCAACCCTCCCACCATAGTGCAGGACAAAGTGCTGGCCTTGATCCAGAAGTTAGGCTGCAGCTGGAGCAGCCCAGACCTCACGGGCGTGGTGCACATCTACGAGGAGCTGAAGAGGAAAGGGATCGAGTTTCCTATGGCAGACCTGGACGCGCTTTCTCCCATCCACACACCACAGCGGGGTGTGCCGGAGGTGGATCCTGCCACTCACATGCACAACCctcagccccagccccagccccgtGTGGGCACCGCACCCCCATTCACCGGCACACTGCCCCCGACCTACACCGCCCCGCAGATCCCCAGCCTGCAGATCGCCCGGCTGCGCAGTGAGCTCGACATCGTTCGTGGAAACACCAAAGTGATGTCAGAGATGCTGACAGAGATGGTGCCCGGACAGGAAGACCCCTCCGACCACGAGCTCCTGCAGGAGCTGAACCGCACCTGTCGTGCTATGCAGCAGAGGATCGTGGAGCTGATCTCACGGGTCTCCAACGAGGAGGTGACCGAGGAGCTGCTCCACGTGAACGATGACCTCAACAATATCTTCCTGCGCTACGAGCGGTACGAGAGGTATCGGTCCGGCAGGGCTGCACAAGGCGCCAACAATGGGGATGAGTTCGACATGTTTGCACAGACTAGAACCAGCTCCCTGGCTGATCAGCGTAAAAATGTAAAGTACGAAGACCCCCAGGCACTGGGCGGCCTGGCCTCTGCCTTGGACGTCAGGCAACAAAATACAGTAGGGATTCCTGTTGCGCAGTCCTCTGTCATGGATGACATTGAGGAGTGGCTCTGTACTGACGTGAAAGGAGATGAGGCCGAGGAAGGCGTAACGAGTGAAGAGTTTGACAAGTTCTTAGAGGAGAGGGCCAAAGCTGCAGAGATGGTTCCATCCCTCCCATCACCCCCTAGTGGAGACCCTGCCCCCCCCGCCAGCGCGCCGAGCGGAAACAGGAAGAAAGCCGAGCGATCCGAGGATGCCCTCTTCGCCTTGTAGATGCCCACCTGGTATCTCTGCAAATCCCCCCCCTCACCCACATCTCCATGGCACAAGCTGCAGCTGCCATCCTACACACCCCACCCACGCTCACTCGCCACTCCATCAGACCTCCAAAGCACAGAATGGCTTCCCCTTTGCCcgtcccccccctccccccgttCCTGCTACTTTCGTCACACTGAGGCCCTTCCCCCTCCAGATCACCTTCACTCCACCCCTCCCCCTAACCGTCTCCCTCTGCCCCCCCTCGCATCACTTGCTGTTCCCCAATCCCAAATACTCTGTCCGCCACATTTAAGTCAATTCCTTTCAATTCTTTGctgataaaatacaatgaacTTGGGAGAAATGCAATTTACCTGTGGGAGGGGCAATTGACTAACATATACAAGTATATTGTTAATCCAAattcacacaaagaaaaaagttatttaaggGAGGCTCTAAAAACAAAAGCCCTTATAAGTGAGAGAATTTTCTTTTATAATACCTATTTCAAATTGTTTGCAGTCTACAAGGGATGCGTCTCTGAAATGATCACTCGTTGATTTATGACACCTTTCCCTCTTGATTGAATGCATTGAGTTTggatatctgtttttattttattctagttTAGTCTTTTGGTTACTTAAATTAAAGGTGTGCTGTGGCCTGGGCTGCTCTCAAGCAAAGGTGGTACTTGATGTGGGCAGGGGGGTTCCAGTGTCTTAATCCTGCATCTTCTCTCTGTGTACATCTGTTATGGTTTAATGGGCGGTGTTTTTCCAGAGGCACTCTGTTATTGGTTTAAAACCCaggtctattattattattattattattattattattatttTGCATTAAAAGCCCTGTAACACTGCATCTAAAGCATAGTGGAGGCCCTACTGAAATCTGCAAGGTTCATTGTTGATTGGAGGGGATTGACAGTTTTACTTTGTAGAGGGTCCGAGGTATAGTTTAAATGAGctgcacattttcaaaagaCTGGGTGTAGGATTTGAAAGGGGAATGCAAGATGGGTAGTGACCTACtctgagattattatttttttaataataataataataataataataataataattattattattaattattattattattattactattatgtcctatactattattttttatgtcctTCAAGACATCTCTGAGGTCTTTCCtgcc

Function

symbol description
tom1l2 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be integral component of membrane. Predicted to be active in endosome and membrane. Orthologous to human TOM1L2 (target of myb1 like 2 membrane trafficking protein).

NR:

description
PREDICTED: TOM1-like protein 2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018439 True 2538 mRNA 0.49 15 11091296 11118823

Neighbor

gene id symbol gene type direction distance location
AMCG00018430 NA coding downstream 598333 10485173 ~ 10492963 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding downstream 706439 10377293 ~ 10384857 (-)
AMCG00018427 NA coding downstream 725041 10342142 ~ 10366255 (-)
AMCG00018420 NA coding downstream 860095 10223672 ~ 10231201 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding downstream 872808 10202779 ~ 10218488 (-)
AMCG00018438 atpaf2,LOC102781490 coding upstream 21266 11140089 ~ 11142854 (-)
AMCG00018447 LOC100195964 coding upstream 55032 11173855 ~ 11196168 (-)
AMCG00018448 NA coding upstream 87919 11206742 ~ 11209424 (-)
AMCG00018446 NA coding upstream 103006 11221829 ~ 11236984 (-)
AMCG00018455 fahd1 coding upstream 251710 11370533 ~ 11371192 (-)
G116368 NA non-coding downstream 111618 10977222 ~ 10979678 (-)
G116367 NA non-coding downstream 117989 10973095 ~ 10973307 (-)
G116365 NA non-coding downstream 120209 10970880 ~ 10971087 (-)
G116355 NA non-coding downstream 352288 10738551 ~ 10739008 (-)
G116352 NA non-coding downstream 420277 10609018 ~ 10671019 (-)
G116446 NA non-coding upstream 133536 11252359 ~ 11253565 (-)
G116454 NA non-coding upstream 161543 11280366 ~ 11353097 (-)
G116501 NA non-coding upstream 392640 11511463 ~ 11514493 (-)
G116511 NA non-coding upstream 412975 11531798 ~ 11532070 (-)
G116529 NA non-coding upstream 489314 11608137 ~ 11609570 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 7516 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 511191 10562554 ~ 10580105 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other downstream 706080 10360129 ~ 10385216 (-)
G116306 NA other downstream 749207 10335201 ~ 10342089 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other downstream 758314 10303054 ~ 10332982 (-)
G116428 NA other upstream 80755 11199578 ~ 11202888 (-)
G116577 NA other upstream 792191 11911014 ~ 11911336 (-)
AMCG00018490 NA other upstream 1168745 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 2134262 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 2526545 13645368 ~ 13727870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02623348_02657507 TOM1L2 coding CI01000113 null 2623137 ~ 2657507 (+)