G116501


Basic Information

Item Value
gene id G116501
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11511463 ~ 11514493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145912
TTAAGCTCCATGAAGATTTTTATTGGACAGCAATCGTGCCGTCAAAATTGCTGTACACCATACAAAACGGATATTCTTCTGCCACAAGCAGTAACACGGCCCACgtctaaaaaaaaacacaagccaaTACTGAGCAgatattaaaagacaaaaaaaaaaaaaaaaagagaaacaataaaacaaaccaaaatcaatgcataagtaaataaatacatacaggtttaataatagtaacattaatattaatattaataacagtcTACAGACCTAATGTATTGTACATGCATGCACAGTTTATGTAATTAGTAAATACTTCTTAGTTATGGAAGTGGCAACAGAAGTGTGATTTTATATGCTCTTGCCCCCTAATGCTTCTGCTTTCCAAAGCTGGCAGTATGTCTGAACTCCATGTGCCTTTGAAATGGGCCATCTAGCAGGATAAATAGGGCTGGATTGATCATGGCACAGAGCAAACTAAAGGGAATACACAGGTGTGTATCTGCATGCTGTACAGTATCCTGAACTGGACAGTTGTGGAACACTTACAAATCTACTGAAACATGTAAAAAAGGATGCTAAAATTTAAACACAGACTCCCTCAAATagggagaaataaatatttctcaTCACTAGGTCTATATTGTTTAGTACTGaataaagagaacaaaaatCCACACACTAGTGACtattaagaagaaaaactaaatcacaCCTACAGAACCAGCCACATCAAGCATATAGAATGGAGAGGGAAGTCTGATTTAGGCTGTTGCTCGGTCTGCTCTAAGGTTAAGCTCGGCACTGACCCCTACTGGAGCAGAGAACCAAGTGTGTCATTAGAGGGCGAGAGAAATCACAATCAGAAGCAACTCTGAATATCAAAGTCTTCCTCTgaatttttcttcttttgtaaaccacagaaataaataaataaaacactttgctttttcgagaacaaaataaataatatacagcGTCCTCCTCAGAGATTAATTTTCAGATCTTTTTACAACAGTGGTCTAATTATCGACATAGAAGTAACACTGGTTGAGACTGGTAGCAAATTAAACAGAGACGCATATAGTCCAGTACAGTATGTAGCTCATTGTTATGTACAGCTTCTGAACTATTTGTTAATAACATAAGCTTTACGTTTATTATTAAGATAATAATCAGAACTGCGACTGAAAACAGACTGAAAAACATTCATTGCTTTCAAGAAGCTCAACTTGTTGTCATGGCGGTGTTGACATAAAATATCCTGCTTCATTCAAACTGGTTAATGTTCACTCCGGGCAACATGAAACTGTTCCTGTGACATCGGCCTACTTAATTAACTGAGCCACACTTTGACAGGCACAGGACAATTAAAATGCCAACGATACAGTAGTGGGTCTGCACATAATCCCACTGAAAAGACTGGAAGAgagctgaataataataaaaaaactgcataagaaataaatacacataacaaacacattttataaaggaAAGGTGGCTGCATACACTGAGGGGACCACACTGCATTGGAGGGAGGAACAGTTAATTACCCAGGCtaatatgttttctttcataTCCTATTTAAGGACACAGTGACACTGTTTTGAAAAAAGATAATTTTTTAAAAGCCTGCTTTATATTAATCAAATCTTGTGCACGGGGTGATTTCCTATTGTAACAGGCTCTGCTGCTCTTGCACTGTATTGGGCTCCCCAGCTCTTCTActccaatcatttattttttaaaggacaaaaaAGCAGCAACTCAGTATAtcatctaaacaaacaaaaaattaggAGCTAAAGATCATACTTTATCATACTTTATTTGaggttaatttaaatacattcaacgTGGtagtttacaaaaaataaaagtcctctttcttttaaatagtCTCATACTAATGTTAGACTGTCTGATACTGTACAGGCCTACGGCAGATTTAAAACGAGGTTCACATTATAAGGTAGGCTGCAGTGCCAGCCATCACCCGGTGTTGCAAAACACACTGGGTCATAGCCTGTGGATTTGAAGGGATTTCTGATTTGACCAGCTTTGTAATAATCTAAGGAATCATCCTGGCAGTGTGTGCAGTTTATAAAGCAGTCAGATCAGTCCTCTAGCACCACAATAAAATGCAGTCTTACAGTAAGAGCTATATTACGGGTTAATAATCTTCACTTTCAGAAAACAAGGGAGACCGGTGGACATTTTCAAGACTGCCTTGTGTTAGATGGCCATGTGTATCTCTGTCTATAACCTTTGCTTTGAATATTCTCTGCAAATAAGAATTGTAATTAAGTATAGCTCGTAAAAACTGAAGTCTACACCTCATTTATATCAATATCCAATCATAGATGCAGAGCTCTCTGGGTTTGCTTTGTTGatttttcatattcattttaagaGACCTGGAGGCCGTCTGCCTGTTGAGACCCAGCTGGGGTGCAGGACTAAATAGAAATGTAAGTGTTTTCAAACTAAGGTGAAGTGAAAGGAAGAGGACTGCATATGCATACGATTCAGACGTGTTCCCCTTCAGTGACACTGTGACGGGGTGGGGTGGGCTGGGAGCATCGACATCATCCACAGCAGTTGTTTGAGTTTCCCATTCTGCAGCTCagaagcacagaaacacagcttGGCAGAGTCATTCCCAAATGCATTGTAAACACTTAAAATAGTAGCGGTCtatggtttttgtttgtatgtacatttaagttactttcctcttttttctagaactaaatataaaatatcctatattttaatatatggaGAGATTTGAAATCAGTCAGTCTGTTCtgtcattctttgttttttttcctttccaattTGCAGTATTTGCAGtctattttttttgctttaggGCAAAAGGAGTTCCTTCATAGCAGGGGTGAGAGCAGTGCTCTGTTTGGCACACTGTCTGCAGCCTCATCACCAGGCCAGAGGGGAGGCCATGCGGGGGCTCCTGGGGTTCTCGGTGGCCCGAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU145912 True 2999 lncRNA 0.38 2 11511463 11514493

Neighbor

gene id symbol gene type direction distance location
AMCG00018458 NA coding downstream 69385 11437510 ~ 11442078 (-)
AMCG00018457 pgp coding downstream 85975 11417434 ~ 11425488 (-)
AMCG00018459 NA coding downstream 94366 11411990 ~ 11417097 (-)
AMCG00018461 NA coding downstream 110896 11395104 ~ 11400567 (-)
AMCG00018460 NA coding downstream 117996 11386988 ~ 11393467 (-)
AMCG00018466 NA coding upstream 28303 11542796 ~ 11561823 (-)
AMCG00018473 NA coding upstream 412444 11926937 ~ 11944889 (-)
AMCG00018472 NA coding upstream 430806 11945299 ~ 11958566 (-)
AMCG00018474 NA coding upstream 446091 11960584 ~ 11967995 (-)
AMCG00018480 NA coding upstream 608380 12122873 ~ 12135103 (-)
G116454 NA non-coding downstream 158366 11280366 ~ 11353097 (-)
G116446 NA non-coding downstream 257898 11252359 ~ 11253565 (-)
G116368 NA non-coding downstream 531785 10977222 ~ 10979678 (-)
G116367 NA non-coding downstream 538156 10973095 ~ 10973307 (-)
G116365 NA non-coding downstream 540376 10970880 ~ 10971087 (-)
G116511 NA non-coding upstream 17305 11531798 ~ 11532070 (-)
G116529 NA non-coding upstream 93644 11608137 ~ 11609570 (-)
G116610 NA non-coding upstream 578976 12093469 ~ 12118810 (-)
G116619 NA non-coding upstream 605315 12119808 ~ 12120607 (-)
G116672 NA non-coding upstream 780968 12295461 ~ 12298711 (-)
G116428 NA other downstream 308575 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 364523 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 427683 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 931358 10562554 ~ 10580105 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other downstream 1126247 10360129 ~ 10385216 (-)
G116577 NA other upstream 396521 11911014 ~ 11911336 (-)
AMCG00018490 NA other upstream 773075 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 1738592 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 2130875 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 2728052 14242545 ~ 14263154 (-)

Expression


Co-expression Network