AMCG00018480


Basic Information

Item Value
gene id AMCG00018480
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12122873 ~ 12135103 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018480
ATGCCGCTCCGcgtccagctgctgctgctcatcCTGCTCACAGAAATCAGGAATTCCTCAGAGGAGCTTCGATCACTGAGTGAGTCGCCCCACGTCTCCCACACGCCAGGGATTCCTGGTCTTTCAGGAGGTGAGCCCTGGACCCCAGGAGCCACTGTACCCGGGCTGGGCAATAGCAGCGGCACAGACCACGTTGGTGGACCAGGGTTGGCAGATGGGGGGCAGGGCACGGTCTCGGCATTCCAGGACCAGAGCCCAGAACCCCCCCCAACACTCAGCCCCGGCACATCTGCGGCATCAGATAAGGAAACGCCCCCTCCCTCTCAGGAAGCGGAGAATAATAACCCGGATACGTCTGGTAGAGCTCTGGATCTTTCACACCACACCGACACTCCTGGCTCTGCGGCTGCCGGCCAGGGGAGGGACTGGGAGAGAGCTGGACTGGGAGGGCAGGCTGCAGACACTGCAGCGAGGGATCTGGGCAACGTGACTAGGCCATCTCTCACAGGGgttcctctctctccagccgCTGCAGATTCCCACACGGCTCGCTCTGGTGCCACATACCTCCCCAACACAAGCTTCTCTCAGACTGTCCCTTCCACACGAGCTGAGCTgcaggcagagaggagagataACCCCCCTGATCACACTGACCCCACAAGAGGACCATATCTGACTGGAAAGGATCCCCTCCACCCCGTTGTGCTCCACACTGAAGACACCCCATGTGTGACGTGTACCAGCTCTGTTACACAATCCCTGCCAACTCGGACGGACTCGAGTTCCAGCCTGTTACCCACACGACTGCTGACTAGTGGAGATGGCAGATCTGGTGAGATCCACTCAAGCTCAAAGACAGAGGGCTACATCAGCAGTCATAAAGCGCCCCCTGCAGGCGCTGACTCAAATGGAACTGGGCAAGGAGTGACCACACAGGAGCCCCTCTCTGCTGCGACACAACCCTCCACTGCCTGGCTCTCGCAGGGGAACACACTGCATCCGCTGGGCTTCACTGAATGGACTGAACGGAGAACTACCAAACCAGAGCTGGGTGTGAGTGAGAAGGCTGAGCTCAGCACTGATACGGACGAAAGACAGACGCAGGGAGGGGGGGTTCCCACTGATGGACAGCAGGCCAGTGAAAGAACCCCAGACTCTTCCTTGACAAACAGCGGAGACTTCAGAGCCAGTGTATCCCTCCACAGCTCAGCCTCCCTTGTTACCAGGAGCCTGTCTGAGGGCGAAGGGTATAATGTCTCTGTGCTAGGCATATCTGAGGAGGGGGGCCCTATATTAGTGTCTACAGAAGGACTTGGCTCTGGAGCTCGGCTGTCTACTGCTCGTGATCCTCAAACTGAGGAGGGAAGAGTGTCCTCACACAGCACTGCTCCCAGGACAGCCAGTGTGGGTGACTCTGTTTCCCCACATGTGTGGTCCTGGGAAGTAGAGACCCTTGTCCCAGTGAGCACTGACACAGAGCAGCCCTCCACCTCAGAGACTCTCCCTCAGTCGGAGAGCCACGGCCCCTCCTCAGAGCAGCCTCCATCCCTTTCGGCTGTCCCCGTCACAACAGAGCCATGGGCAGTGAGCTGGATTGGTAAGAATCCTACTGCTTCTCCAAGTGCAGCTCAGCCTCACATCTCTGTCTACCCCCCTGCCACTGAAACCCTGCACCCCCCGCTAGACACCTCTGCAGGTTCAGAATCACCAGGGGGATACGATGTCGTTACGGCTCTCACCGAGTCCGCCTCCAGCACTGAAAGGGTAACTGACCTTGTTACTATCTCGGGGAGCTCCTCCCCCACCTCACTGCTTCCCACAGCCTGGGACCCCACAGAGAACCGCACACCCCCCAGCCACACTCCCTCGTGGGGCGGGTCCACTCCTGCCAAGGAGACCTATTTCTCGGGGCCCCCTCACAGCACCCCCCCTGCTCCAGAGCTTCACCCCGCAGGGCAGACTACTGCTTGCCAGGGTACCACGACGCAGGAGCCGGGGCCAGAGTCCGAGAGCCCCCAACTGAGGAGGGAAGAGGGCGGCTACACAAGCCCTACGAGACAACCAGGCATGGACACCAAGAGCACCGATGCATATACCGACACCGTCACTACGGTACCCACACACAAATCCAACCCCTCGGACCCCGACAGCCCCCGGCCTGCTGTGACCAGACTGGGCACCAGCACTGCAGCCACATCGGTGACCCCCAGTGTGGCGCCCTCCACATTTCACCCCACTCCAGCAGGGGGTGGTACTGTTGTCTACTCCAAGACAGGGGGGAGGACTGCCCATTCATTCACCACGTGGCCCACCTCTCAGACCACCAGTTCACCACAGGCCCTCACCCCATCTGTGTGGGGAGGGGTGGTGGCCAGTGGTGCCACACCAACTTCTTACAAGACCATGGGCCCGGCAGTGGACCCTCCTACTCCAGCCACACCCCCACATGGACCCACCAGTCTGTCTCCTGACAGGAGAACCAGTAGGACAACCACAGTCCCAGGCATGTCCACTAGGCCCAGCACTGACCGGACATCAAGGGCTGAGACCCGGCCTGGCTTGGACCCTACGAGCTCTCGGACACAACGGCCCTCCACTCCACAGGGGAGATCGTCCAGTGCTCCTCCTGGACAGCAAGACAGAACCTCTGCACCGCTCAGAACATCACTCAAACCCAGGGTCGCGGGGGACAAGAGCAGGGTTTTCATCACTGGGGATCAGCCACCGGTAATCAAAGAAGAGACGCTCCGAGTTCCTCTGACGATCGTGCTGGAGACTGGAGACCAGAGCACCCAGAGGTCACTACAGCCGGAGCAACTGCAGGAGGACACGGTCAGACAGGTGGAGCCCTTCCTCCAGAGAGCTCCTGGATACCATGACCTGCAAGTCTCCACAACCAGtgggTGGGAAGTGCTGTACTGTGATGCCCTGTTTGGCACTGGGGCCGCTCTGCTCTGGCTGGGGCGCCCAGGGGAGCCACTGAATGCAACGGGCCTGAGTGAGGCGGTGAGACGCGGGCTGTACATCGCGGGGGTCAGGGTCCACAACATCACGGTCAGCGAGCCACAGGCTGACATGTGCTCCTGGCTGTTTCTGTGCCCACCGGGGTTCCAGTGTATACCCAGTGGCGTGGGCAATGCCAGCTGCTCTTCACTGTGCCACATGGACTACTGCAAACACAGTGGCATCTGCACCCACCACCACAGCCAGCAGCCAGTTTGCCAGTGCCCAGTGGGGGAGGATTTCTGGTTCATGGGGCAGCGCTGTGACTTCAGGATGACCCGGCAGAGGATGGTTGGCATTGCCCTGGGGGCGCTGCTCTCGGTGGCGGTGGTCATGGCCATGCTGTCGTTCCTGGCGTACCGTCGCTTCAAGGCCATGTTGATACAGGCCAAGGTGGACCAGACCCGCAGCAGTTACCGTCGGTTCAGCCGCTTTGACGATCTCTCAGGCCGGTTCTGGACCCAGTCGTGGCCCGGTTCCTCTGTGGACTCCCTGGATAACCCGGCCTTCAGCCGCTCAGATGAACTGCTGCACCTGCGAGCCCTTGACCGCACCTGCTGCTACCATGATGACTCGATCTCCCTCAGCTCCACCTGTCAGGGCAGCAGAACCCATCTGAACACGGTCTACACACCCAGCTCCCATTATAACTGGGGTCTGAGCAACGGCAGCATCAACGACTGCATGGCCGACTCGGGGAAGGCCAGCGACCTGTCCGTGTGCAGCTGGCCCATCGAGCCCATCCAGTGGACGCCCTTCcccctgctgcagcagctgggcATCCAGAGAGCGGTGAGTCTGCACCCGCTGCACCCCGGGGACCAGGAGGCCGAGCTGCTCTCCCCCTCACTATTTCACAtcgataaaatatatatgtaa

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018480 True 3885 mRNA 0.60 9 12122873 12135103

Neighbor

gene id symbol gene type direction distance location
AMCG00018474 NA coding downstream 154878 11960584 ~ 11967995 (-)
AMCG00018472 NA coding downstream 164307 11945299 ~ 11958566 (-)
AMCG00018473 NA coding downstream 177984 11926937 ~ 11944889 (-)
AMCG00018466 NA coding downstream 561050 11542796 ~ 11561823 (-)
AMCG00018458 NA coding downstream 680795 11437510 ~ 11442078 (-)
AMCG00018479 NA coding upstream 3670 12138773 ~ 12147324 (-)
AMCG00018486 NA coding upstream 68097 12203200 ~ 12222768 (-)
AMCG00018484 LOC103399497 coding upstream 88548 12223651 ~ 12234901 (-)
AMCG00018485 NA coding upstream 136893 12271996 ~ 12273462 (-)
AMCG00018488 caskin1,LOC107721515 coding upstream 184303 12319406 ~ 12350065 (-)
G116619 NA non-coding downstream 2266 12119808 ~ 12120607 (-)
G116610 NA non-coding downstream 4063 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 513303 11608137 ~ 11609570 (-)
G116511 NA non-coding downstream 590803 11531798 ~ 11532070 (-)
G116501 NA non-coding downstream 608380 11511463 ~ 11514493 (-)
G116672 NA non-coding upstream 160358 12295461 ~ 12298711 (-)
G116749 NA non-coding upstream 739812 12874915 ~ 12876763 (-)
G116750 NA non-coding upstream 744562 12879665 ~ 12884422 (-)
G116784 NA non-coding upstream 854333 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 1195788 13330891 ~ 13342748 (-)
G116577 NA other downstream 211537 11911014 ~ 11911336 (-)
G116428 NA other downstream 919985 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 975933 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1039093 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 1542768 10562554 ~ 10580105 (-)
AMCG00018490 NA other upstream 152465 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 1117982 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 1510265 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 2107442 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 2368300 14503403 ~ 14520875 (-)

Expression


Co-expression Network