AMCG00018479


Basic Information

Item Value
gene id AMCG00018479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12138773 ~ 12147324 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018479
CTGTACAGGACCCCCTGAGGCAGCAGCTCCATGGGCATGGCACAGCGTGTGTGATGTGCAGGGGCCATCTACTCCTGATGCTACCGACCACACACCTGACGTGGTGGAGACTGGGATGCTGACCCAGACGAtgggaggagaagaaaagagaggagggggagagaggagggcagTCACAGAGTCGCTCTCTTTCTCCTGTCCAAATGTTGCCGAAGACCAGGGCCTCCTGTTGCCGGGGGCTGAGGTGCTGGGGTCTGCCACATTCCTGTGTCCGGCTCCAGTGGAAAACAGGTGGAGAACTGCTGTTGAGACACAGGAGAGGCTAGCTGGGGAGGGCGAGAGTCCTGCAGTTAAGACCGCTTGGAAAGATCTTCCTGATCCCAGAGACAAGCCACCTGGGTTGAATACTGGGCTTCCTCCTGGTGATCTGGAGTCTGGGGTGGCAGGAACCAGGCTGGCTGCCCAGGTTCATTCTCCACTGATTCTAAATCTCACACCAGCCTCCACGCAGAGCGTCGAGACCCCTGCTCCGGCCTCCTGGGGCAGCCCCGCCTTCCCCTCCCTAGGGCTCACCCCTgccctccctctgcctcccaGCATCCCCTCACTGGTGGCCTCTCCTTCCCATCCCCTCCGGCCCCAGGGCAGTCCCCAGCTGCTGCCTCTCTTTAGGAAACGCTGCCGAGAGTCCTCCCAGACCACACAAATGGAACCGCAGTTGGCAGGGCTCCTTGAGAGACCGCAGACCGAAGACAGACCCCCGCTTCCAGATGAAACTGTTGAACACTTCCCTGATACATTTCCACTCAGCctacctctctctccactcATACACCCATCCCCCCTCCCTCAGGTAGCAGAATGCCCCCCTAACTCACAGCAGCCCACGCGCTGTCCCTCCCAGACACCCAGCGCTGACTCAGTGCAGCTCTCCTGGGGGAGGGAGTCTGCACTGAAGGATGGGGTTGATGCCACTCCCAGAGTGCACTGTACCCTCTCAGGCAAGCCTTTCCTGGGTCAGAGTGCACTGGGCATGCTTTCTCCCTTGCCCCCCATTCCTCTGTCCAGCACACCACAGCATCTGCTCTCCCAGGCTGAATCAAACACACCGCCTGGGAGCCAGGACCGAGAGGAGAATGGAGACCCTGATCGTGAGCGCTCTCCTCTCCCTCAGACTGCACAGAGCCTTACAGCCCACCCACCCTCACAGCCCTCTCTCCCACCACAAAGCCCGGGTGAAAAACCTTTATTGCTACCTTCAGCTGATGTGCTGCAGCTCAGCCTGGGTGTGGAGGAAGACCTAGATAGCTACTTCTCTGACTCCATGTGGACTGGAGTCCCAGGGACCCAGCCGCCAGCCCCAAACAAGGTGACCTCACCTGAGCTGAGCCCTAGAGCGAGGCAGAGCCCTTCAGCATGCACTGCAAAGGACCCTGTGTCTGCACCCTCCCCTGCATCCCCAAAGAGCCCGCTGCCTCACCCTGCCTCCCTGCAGCTCGTACATACTCTGAAGGCCCCGGCAGGTCCATGTCTGGTCGacgtgtgcagtgtgtgttgccGTGGGGAGGACGGGGCATTGAGGGAGTGCGTGGTGACCGCAGGGGAgtgggctgtgtctgtgtgggggcCGAAAGTCCAGGGCTGGAGCCTGCTGCACACCTGGACGTTCACTGAGCACCCTGTGATCGGACTCGAGATGCTGCCAGACTCCCCCGGCCTGCTGTGTGTCACCCTGGGACAGCTGGAGATTAGAGAGGCCagGGTACTGGGCTGTGTCAGTGTGGATGGGCCCTTCTCCCACACCCTCTTGTGTGCAGGGAAGGTGCAGGCTGTGCTGGGGGTGTCTGGATGCAGAGTTGCCTGCTGCTCTCAGTCTGAGTCAAGGCAGGCTGTGGATCTAATGAGACTTTCAGAGGAGGGCAGGACGGAGGACACCTTCTCCCTGGCCTCCCCTGGTCAGTCTGTCCGGGCACTGGCTGTAGTGGACGGACAGAAGGATGCTTTGATCGGTTATACGGACTCCAGCGATGTCCTCCTCTGGAACATGAGGACAAGCCACCTGCTGCAGCGCATTTCTCTAGGCTTGAGTTACCCTGGGTCTATGTGTCTGAGAGGATACTCACAAAGTGGCGTGCTGTTCCTActcctgcagtgtgtgtttgtcagtacCCTTGATGGAGAGGAGGGGGCGCTGTTCTCTTTGGTCGCCACCAACCCTGTCACTGCCAAAACCAGCCTGGCACACAGCCTCAGTCAGCCTGCACAGTGTCCAGGGAGGCTGGTGCACGGGGATGTACGGGGGGATGCGGTGGCCGCAGTGTTCCAGTCAGGGGCAGTGGCGGTGTGGGCTGTTGGGGACAGTCGTGTTGTTACCACCCTGCTCCCGGGGCCCGTAGGGGGCTGGCACCTGGCTCGGTGGGGGGGGGCCTGCTCCCTCCTGGCCGGGCAGCTCAATGGAGACGTCTCCCTGTACCACTACTCCCTCCCAGAGCCCTGAGTCTCCCTGAGGACCGCAGCTACAGAGACGCCAATTACACTACAGGAACTATACACAGTGCTCTCCCAGCCAGGCACTGCACTCAAGATAGACATGAAAACTACAGTTTTGAACTATAGCGGttttaaaatagactgaattgcatttaaacgtgtatacaattttacaatactAATCTATTTAAGTCCAGATATGTACTGTTTGTATTGTTAGTTTTATGTGTTTGAATCTATTTAGGCTCTACTGTTTGGAGGAAAAAAGgctatttttaacaaaacatttcaagtgtttataaaacaatgtatattattgtaaccttttttgtgtttttaatattatatataatgtgtgtgtgtgtgtttctcacaCGAAGTTCTTTAGTTTATTTGGGGTTACAGACACTAACtcttgaaaaacaataaataattgcaattaataCACATAAGAGTAAAAAACTGAAAGAGTCTGGTTTGGAAGGTTGACAGAACAAAACTATCGAAAATATCTAATCGTGGCGGTCTATCCCTATCATTAAAAAACGGAAACTAATAAGCTCTCCCACCATTTTGGCTCTGGAATCATTCTAGATTCCAAACGCTGTCATCGCTGCGCATGCGCCCTGCACCCCCTCAACTCCAGcgctttttctcttttcattcgTGTTGCATGGTGGGATTGATCTGGGTTCTCAATCATGGCGTCCCGTGTCCTAGCTCGGTGTGTCCGCTCGCTCGGCCGATCCTCTGGGAGCCTGTGTACGGGCAGCCTTGCTCTTAGGGCTGCCGTGGTGCCGCTTCCATCTCGGCGACCCTTCTCCCTCCTCGCATGCAGCCAGAGAGCACGGCCGGTCGCCCAGACACAGATCTCCAGCTCCCTGGTCCAGCTGTGTCGACAGTATGGTGATCTGCCTCCTCTCACGTTGGACTCCATAAAGGAGCGGGTCCTATATCTGTCAGTATCTTCCCACTTCATGAAAGACCTTGGGTTAGACAGCCTGGACCAGGTGGAGATTATTATGGCCATGGAAGATGAATTTGGCTTTGAGATCCCAGACGTTGAGGCAGAGAAGCTAATGACTCCTCAGGAGATCGTACAGTACATCGCTGACAAGAAGGACGTGTACGAGTAAAGAGAGGCACAGCGCTACAAGGAGGTcggtctccctccctctctttgtcTTCACTGATCTTCAACTACTGTGATATTCACTCTTGTACCACAACCTGTTTTGAAGACTTCTCAGTTGAGGCTCTTCAATGGAAGACATCTATAGTAAATTGAGTAATCTGAAGTGTTCAGTTGATGGCACAGGGAATGATTTGAAAGACCTAAAATTCACCATTAAGTTGAAAGTTTAAGCATGTGTGCCCCACAGGGATAATATGCAGTCCTCAGGTAGCCTGTATATGCTCATGGATCTGAACGAGGTTACTGCATTGTGGTGGTCTGCCTCTCCAGGTCTGGGGAGCCCCACTGTTTTAGGATTGTCTTTGGCTTATAATCCTGTTCATTTTGACTATTGATTGACCCAGTTATATAATTGTGAGCTCACTTGAAATGAAGCCCAGAAGCCTGTATGTTAGTGCAATTCACTTCATGTCTTTGTTAGCACAGATGGCGTTTAATCCTATTGGTTGTGCAGTAAGATGGGTTTCGCTCTGTGCTTGTGCAAcatgtcttctggttttcattccacctgagccCTTGGTTACTATTAGTGATGCCTGAATTGAAATAATGATGCTGTATCACACCCcatcaggatttttttttattttattttttatttttaaaggcaattCAGACTTCACTTGTTATGAATTTAGTTGGAATGGGGAATACAAGGTGGGACCAGAGTGGGCCCCCCTGCAGTGACGGTGACATTATTCCTCTTGTTCGCAGGGTGGCAGACGTGAAGCCCCCATGACCCCGAGGACCTGTCACAGGTGGTGTTTTTCAGTCACTCAATGTTTTCAgaaactgttttttgttgttcctGGCTTTCCTGTGTCAACTTCGCTATCTGCTgtacacattgtatttaaaaataaaagaaaataaaaaatgtctaaaGCTTGTAATGCgtttggagagagaaaaaaacaaaaaaaacgacctaaaataaaatgttaaacctCTTGGTTTGACTTTTGTACTGAAAAAGCTGTGGGTTTGTGCTACAGTGACACCTAGTGGTTAGACAGTGCATTTCACACATTCCCAGGGTGGGTTTCTTGTGCAACTGGTCAATGTGGGTTTGTATAGttcttttaatatacatatgcattattttaagatgcttagttttattaaaatgtacagagtCTGGGAAGGGACATAAG

Function

GO: NA

KEGG:

id description
K10897 PALB2, FANCN; partner and localizer of BRCA2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018479 True 4839 mRNA 0.52 11 12138773 12147324

Neighbor

gene id symbol gene type direction distance location
AMCG00018480 NA coding downstream 3670 12122873 ~ 12135103 (-)
AMCG00018474 NA coding downstream 170778 11960584 ~ 11967995 (-)
AMCG00018472 NA coding downstream 180207 11945299 ~ 11958566 (-)
AMCG00018473 NA coding downstream 193884 11926937 ~ 11944889 (-)
AMCG00018466 NA coding downstream 576950 11542796 ~ 11561823 (-)
AMCG00018486 NA coding upstream 55876 12203200 ~ 12222768 (-)
AMCG00018484 LOC103399497 coding upstream 76327 12223651 ~ 12234901 (-)
AMCG00018485 NA coding upstream 124672 12271996 ~ 12273462 (-)
AMCG00018488 caskin1,LOC107721515 coding upstream 172082 12319406 ~ 12350065 (-)
AMCG00018489 LOC105030342,LOC107721515,LOC107654476 coding upstream 215972 12363296 ~ 12371524 (-)
G116619 NA non-coding downstream 18166 12119808 ~ 12120607 (-)
G116610 NA non-coding downstream 19963 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 529203 11608137 ~ 11609570 (-)
G116511 NA non-coding downstream 606703 11531798 ~ 11532070 (-)
G116501 NA non-coding downstream 624280 11511463 ~ 11514493 (-)
G116672 NA non-coding upstream 148137 12295461 ~ 12298711 (-)
G116749 NA non-coding upstream 727591 12874915 ~ 12876763 (-)
G116750 NA non-coding upstream 732341 12879665 ~ 12884422 (-)
G116784 NA non-coding upstream 842112 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 1183567 13330891 ~ 13342748 (-)
G116577 NA other downstream 227437 11911014 ~ 11911336 (-)
G116428 NA other downstream 935885 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 991833 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1054993 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 1558668 10562554 ~ 10580105 (-)
AMCG00018490 NA other upstream 140244 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 1105761 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 1498044 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 2095221 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 2356079 14503403 ~ 14520875 (-)

Expression


Co-expression Network