AMCG00018489 (LOC105030342,LOC107721515,LOC107654476)


Basic Information

Item Value
gene id AMCG00018489
gene name LOC105030342,LOC107721515,LOC107654476
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12363296 ~ 12371524 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018489
ATGAACAAGTTCTCAGCATTGCACCATGCGGCCCTCAACGGGAACACGGAGCTCATTTCCCTGCTGCTGGAGTCCCAGGCCACAGTGGACATCAAGGACCAGAAAGGGATGCGCCCATTGCACTACGCGGCCTGGCAGGGGAAGGTGGAGCCCATGAAGATGCTGCTGAAGTCGGGCTCCTCGGTGAACGGCCAGTCGGATGAAGGACAGATCCCCCTGCACCTGGCAGCACAGCACGGGCACTACGATGTGTCCGAGATGTTGCTCCAGCACCAATCCAACCCCTGCATTGTGGACAATGCTGGGAAAACCCCTCTGGACCTGGCCTGTGAATTCGGCAGAGTGGGGgtggTCCAGCTGCTTCTGAGCAGCAACATGTGCGCCGCCCTGCTGGAGCCCAAACCGGGCGACTCCACCGACCCCAACGGCACCAGCCCACTGCACCTGGCAGCCAAGAATGGCCACATCGACATCatcaggtcagaggtcaaggcGAGGGACAGAGGCATGGGGAGGGTCTCAAGGGTAGGGAAAAAGGTGGAACCGGGTTTTCAGGAGAGTCTGTATTTCTCGGTTGTTGAGATTCAGTTTCTATTGTTGAAACAGATCAATCGTGACTTTGAAATCTCA

Function

NR:

description
PREDICTED: caskin-1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018489 True 630 mRNA 0.57 5 12363296 12371524

Neighbor

gene id symbol gene type direction distance location
AMCG00018488 caskin1,LOC107721515 coding downstream 13231 12319406 ~ 12350065 (-)
AMCG00018485 NA coding downstream 89834 12271996 ~ 12273462 (-)
AMCG00018484 LOC103399497 coding downstream 128395 12223651 ~ 12234901 (-)
AMCG00018486 NA coding downstream 140528 12203200 ~ 12222768 (-)
AMCG00018479 NA coding downstream 215972 12138773 ~ 12147324 (-)
AMCG00018494 NA coding upstream 147805 12519329 ~ 12530668 (-)
AMCG00018495 NA coding upstream 173416 12544940 ~ 12553398 (-)
AMCG00018496 NA coding upstream 199364 12570888 ~ 12574512 (-)
AMCG00018499 b9d1,LOC107737762,LOC107674617 coding upstream 277354 12648878 ~ 12655239 (-)
AMCG00018505 NA coding upstream 542490 12914014 ~ 12923467 (-)
G116672 NA non-coding downstream 64585 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 242689 12119808 ~ 12120607 (-)
G116610 NA non-coding downstream 244486 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 753726 11608137 ~ 11609570 (-)
G116511 NA non-coding downstream 831226 11531798 ~ 11532070 (-)
G116749 NA non-coding upstream 503391 12874915 ~ 12876763 (-)
G116750 NA non-coding upstream 508141 12879665 ~ 12884422 (-)
G116784 NA non-coding upstream 617912 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 959367 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 995050 13366574 ~ 13367055 (-)
AMCG00018490 NA other downstream 72752 12287568 ~ 12290544 (-)
G116577 NA other downstream 451960 11911014 ~ 11911336 (-)
G116428 NA other downstream 1160408 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 1216356 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1279516 11061628 ~ 11083780 (-)
AMCG00018522 NA other upstream 881561 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 1273844 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 1871021 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 2131879 14503403 ~ 14520875 (-)
G117377 NA other upstream 2364614 14736138 ~ 14738312 (-)

Expression


Co-expression Network