XLOC_005292 (tecpr1a)


Basic Information

Item Value
gene id XLOC_005292
gene name tecpr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17794284 ~ 17810543 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010164
CTGTTTTGGATCTCTGGGAGTTTAGCGTAGGGCAAATCACAGACAGATTTCGCCAATCTGAGTGGTCTCAAGATGACAACATAAACTCAGTGCTCCCACCCGGACACGGACAAGCAGGGAGCATTATGCCGAGCTCCCTCCTGTGGGCTGTTGATGTGTACGGGAGGGTTTACAGTCTTTCGACAGCGGGACAGCAGTGGGAACATTGTCGCGAGGCCCATTTGGAGTTCAAGCGCATCACGGCTGTGCAGCAGTGTTGCTGGAGCATTGCCTGTGACCACAACATCTACCTGAACGTCCATGCAAGTGATGTGCCCATCCGCTACCAAGAGGACACGTATGAAAACCAGAGGTGGAACCCAGTCGATGGCTTCTCAGACCGGTTGTTGCCCAGTGACCGATGGCAGTGGAGTGATGTCACCGGGCTGAAGCACCAACCTCTGGCTGACTTTCAGCTGCCCTCTGAGAACTGGGAGTGGGAAGGGGACTGGTATGTGGATGAAAACTTTGGAGGAGAGCCCACAGAGAAAGGGggatGGACATATGCTATTGATTTTCCAGCTACTTACACTAAAGATAAAAAATGGAACTCTTGTGTGCGTCGCCGCAGATGGTTACGATACAGAAGGTACAAGGCACAGGACACTTGGGTCAAGATCCCCTCAGATCAGACCGGGAGTCTTCCTGACCCGTTTAATGACATCACTTGTGGTGGTTGGGAAGTCACTGAGGAGCCCAGAGGGTGTTTGGCACTGTGGGCTGTTTCTTTGCAGGGCAAGGTGTGGTTCCGCAGTGGCATCAACCACCATAATCCTGAGGGCTCCTTTTGGGAGGAGGTGACCGTACCAGGAGAGGTCGTGCAGATCAGCTGTGGGCCTGGTGACTTGGTGTGGGCCGTCCTGTGGGAAGGTCATCTGCTAGTCAGAGAGGGGATTGGCAGAGACTGTCTTAGGGGGTCATCGTGGGTGACAGTGGAGTCACCGAACCCTGGAGTGGGTGCTGTACATGTAGCTGTTGGTGTGAATGTAGTGTGGGCTGTCACTAAAGATCATAAAGTCTGGTTTAGGAGGGGCGTGAATTCCCATAATCCTTGTGGCTCAAGTTGGATTAGTATGGTTGGAGAAATGGTCATGATCAACGTGGGTCTCAATGACCAGGTGTGGGGTATTGCTTTTGAAGACCGGGCCGTCTATTTTCGTCAGGGTGTGACTGCCAGCGAGCTCAGTGGGAAGGCCTGGAAGGTTGTGTCTTTGACCAGAGATAATGACCGGTCCCATTCTAGTGCCAGCGCAAGCAGCCTGCAGAGGTTAGAGAGCCTCAGCATCTGCAGAATTTGCAAAATGTGTTGCATTTGAAAGAATTTACCACCAGGTGGTAAAATTCATTCAAGAAAGACATTTTGAAGTCATGACACTTTGCAGTTTGCATTGTTTCATCACACCTAACCTCTTAGCAGCCTTAATTTCTTAGAAGAACACTTAAAAGGTTTCTTAACTG

Function

symbol description
tecpr1a Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation. Predicted to be integral component of membrane. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1792 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation. Predicted to be integral component of membrane. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1).

Ensembl:

ensembl_id ENSDARG00000062515

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010164 True 1497 mRNA 0.51 9 17794284 17810543

Neighbor

gene id symbol gene type direction distance location
XLOC_005291 NA coding downstream 66744 17721801 ~ 17727540 (-)
XLOC_005290 pvalb2 coding downstream 81786 17710425 ~ 17712498 (-)
XLOC_005288 pvalb3 coding downstream 86767 17705218 ~ 17707517 (-)
XLOC_005289 dre-mir-2192 coding downstream 87383 17706792 ~ 17706901 (-)
XLOC_005287 pvalb9 coding downstream 95615 17695986 ~ 17698669 (-)
XLOC_005293 baiap2l1a coding upstream 5182 17815725 ~ 17863467 (-)
XLOC_005294 nptx2b coding upstream 78922 17889465 ~ 17897134 (-)
XLOC_005295 NA coding upstream 413991 18224534 ~ 18227730 (-)
XLOC_005296 tom1l2 coding upstream 571439 18381982 ~ 18408588 (-)
XLOC_005297 atpaf2 coding upstream 600065 18410608 ~ 18414539 (-)
XLOC_005275 BX000534.1 non-coding downstream 795842 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 827476 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 851036 16942204 ~ 16943248 (-)
XLOC_005298 NA non-coding upstream 642664 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 927870 18738413 ~ 18738529 (-)
XLOC_005318 NA non-coding upstream 2246428 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 2378626 20189169 ~ 20189286 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01188049_01192674 TECPR1, TECPR1A coding CI01000063 null 1188049 ~ 1192674 (-)
bowfin (Amia calva) AMCG00018424 tecpr1,LOC102784946,LOC103372311 misc CM030135.1 CM030135.1 10303054 ~ 10332982 (-)