XLOC_005290 (pvalb2)


Basic Information

Item Value
gene id XLOC_005290
gene name pvalb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17710425 ~ 17712498 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010162
ACATTTTTTCGAGACTTTGCTCAACCTAAGCAAATGGTGTCCGTTACAACACCACAGACAAGTGTATAAAAGCGGGGCCCGTGGCTACTTGGGTAGTCGTCGCACATCTGTGGAACAGTAACAGCGCAGCGCAACGAAAAAATCAAAATGGCCTTTGCTGGAATTCTCAAGGACGAGGATGTGGCTGCAGCCCTTAAGGATTGCGCTGCTGCCGACTCTTTCAACTACAAGAACTTCTTCGCCAAGGTTGGCCTGAGCGCTAAGTCTCCCGATGACATCAAGAAGGCCTTCTTCGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTGAAACTGTTCCTGCAGAACTTCTCCGCTGGTGCCAGGGCATTGACCGATGCTGAGACCAAGGCTTTCCTCTCAGCTGGCGACAGTGATGGCGACGGCAAAATTGGAGTTGATGAGTTTGCTTTGCTTGTAAAGGCCTAAGCATTCATGGACCCTTGCCTTCGGACCCAGAGCTCTGCTTAtcatcttttttatatttatttatgaatgccCTGCAAACTCGTCCTCACAAAGAACCATGTTCAATGTCTTGAAaagctatttattattaatgttgtttcaTTGCATTGTATTGTTCTGTAAAACTCCATCCATGTGCAAACTTACAATCTCATTGCACTTTaaggaaataaaaatatatttgatttaaaacAA
>TCONS_00010163
ATCTGTGGAACAGTAACAGCGCAGCGCAACGGTGAGTTTCCCAGAGGCCTCAGGATCATACAACAGGGCTCGATCAATTTTCTAATCAGTGGAATACGATAAACGAAAAAGAAGGAACTAAATGGGGATGTAAACGGACTTTACGGCAGGACTGAAAACGCGAAAGCAGCAAAGCAAACAACCAAAGCAAACCGAGGACCTGCTACCTTCTGAGCCTTTGGATGAGCTTGCAATGATTGTTTATTCTTTCAAATGATTTTTTCGTGCTTTACATTTGGTTGGCATTGCGATATGTTTTTACTGAGATCATATAATAACTGTAGGAAGATTTCTTTAACTCTAACGAACTCTAACTGATGGGGGATTTAGATGATGTTTATTGGATCAACTTCTTGGTTgcttaaaaagttttatttataagaAATAACATTAAATCTTCAAGTTTATATGCTTTTACATTGACTGACTGAATCCTCATCTTGTTTTTGGTCTTGTTTACAGAAAAAATCAAAATGGCCTTTGCTGGAATTCTCAAGGACGAGGATGTGGCTGCAGCCCTTAAGGATTGCGCTGCTGCCGACTCTTTCAACTACAAGAACTTCTTCGCCAAGGTTGGCCTGAGCGCTAAGTCTCCCGATGACATCAAGAAGGCCTTCTTCGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTGAAACTGTTCCTGCAGAACTTCTCCGCTGGTGCCAGGGCATTGACCGATGCTGAGACCAAGGCTTTCCTCTCAGCTGGCGACAGTGATGGCGACGGCAAAATTGGAGTTGATGAGTTTGCTTTGCTTGTAAAGGCCTAAGCAT

Function

symbol description
pvalb2 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system; myotome; and somite. Orthologous to human PVALB (parvalbumin).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000322-4 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system; myotome; and somite. Orthologous to human PVALB (parvalbumin).

Ensembl:

ensembl_id ENSDARG00000002768

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010162 False 711 mRNA 0.45 5 17710425 17712498
TCONS_00010163 True 846 mRNA 0.43 4 17710655 17712393

Neighbor

gene id symbol gene type direction distance location
XLOC_005288 pvalb3 coding downstream 2908 17705218 ~ 17707517 (-)
XLOC_005289 dre-mir-2192 coding downstream 3524 17706792 ~ 17706901 (-)
XLOC_005287 pvalb9 coding downstream 11756 17695986 ~ 17698669 (-)
XLOC_005286 ccz1 coding downstream 24021 17657224 ~ 17686404 (-)
XLOC_005285 dlgap5 coding downstream 54742 17633354 ~ 17655683 (-)
XLOC_005291 NA coding upstream 9303 17721801 ~ 17727540 (-)
XLOC_005292 tecpr1a coding upstream 81786 17794284 ~ 17810543 (-)
XLOC_005293 baiap2l1a coding upstream 103227 17815725 ~ 17863467 (-)
XLOC_005294 nptx2b coding upstream 176967 17889465 ~ 17897134 (-)
XLOC_005295 NA coding upstream 512036 18224534 ~ 18227730 (-)
XLOC_005275 BX000534.1 non-coding downstream 711983 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 743617 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 767177 16942204 ~ 16943248 (-)
XLOC_005269 BX000534.2 non-coding downstream 808666 16901645 ~ 16901759 (-)
XLOC_005298 NA non-coding upstream 740709 18453207 ~ 18454407 (-)
XLOC_005303 AL772266.1 non-coding upstream 1025915 18738413 ~ 18738529 (-)
XLOC_005318 NA non-coding upstream 2344473 20056971 ~ 20120711 (-)

Expression


Co-expression Network