RNA id: TCONS_00010162


Basic Information

Item Value
RNA id TCONS_00010162
length 711
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_005290
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17710425 ~ 17712498 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTTTTCGAGACTTTGCTCAACCTAAGCAAATGGTGTCCGTTACAACACCACAGACAAGTGTATAAAAGCGGGGCCCGTGGCTACTTGGGTAGTCGTCGCACATCTGTGGAACAGTAACAGCGCAGCGCAACGAAAAAATCAAAATGGCCTTTGCTGGAATTCTCAAGGACGAGGATGTGGCTGCAGCCCTTAAGGATTGCGCTGCTGCCGACTCTTTCAACTACAAGAACTTCTTCGCCAAGGTTGGCCTGAGCGCTAAGTCTCCCGATGACATCAAGAAGGCCTTCTTCGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTGAAACTGTTCCTGCAGAACTTCTCCGCTGGTGCCAGGGCATTGACCGATGCTGAGACCAAGGCTTTCCTCTCAGCTGGCGACAGTGATGGCGACGGCAAAATTGGAGTTGATGAGTTTGCTTTGCTTGTAAAGGCCTAAGCATTCATGGACCCTTGCCTTCGGACCCAGAGCTCTGCTTAtcatcttttttatatttatttatgaatgccCTGCAAACTCGTCCTCACAAAGAACCATGTTCAATGTCTTGAAaagctatttattattaatgttgtttcaTTGCATTGTATTGTTCTGTAAAACTCCATCCATGTGCAAACTTACAATCTCATTGCACTTTaaggaaataaaaatatatttgatttaaaacAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000322-4 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system; myotome; and somite. Orthologous to human PVALB (parvalbumin).

Ensembl:

ensembl_id ENSDART00000010144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010158 lncRNA downstream 12113 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011114 lncRNA downstream 743617 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA downstream 743690 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00011113 lncRNA downstream 758779 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00011116 lncRNA upstream 9303 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 512036 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010171 lncRNA upstream 698113 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 698113 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010172 lncRNA upstream 698113 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010159 mRNA downstream 2908 17705218 ~ 17707517 (-) False XLOC_005288
TCONS_00010160 mRNA downstream 2976 17705221 ~ 17707449 (-) True XLOC_005288
TCONS_00010156 mRNA downstream 11756 17695986 ~ 17698669 (-) False XLOC_005287
TCONS_00010157 mRNA downstream 11908 17696107 ~ 17698517 (-) False XLOC_005287
TCONS_00010155 mRNA downstream 24021 17657224 ~ 17686404 (-) True XLOC_005286
TCONS_00010164 mRNA upstream 81786 17794284 ~ 17810543 (-) True XLOC_005292
TCONS_00010165 mRNA upstream 103227 17815725 ~ 17863467 (-) True XLOC_005293
TCONS_00010166 mRNA upstream 176967 17889465 ~ 17897134 (-) True XLOC_005294
TCONS_00010167 mRNA upstream 669484 18381982 ~ 18408588 (-) False XLOC_005296
TCONS_00010168 mRNA upstream 669487 18381985 ~ 18393408 (-) False XLOC_005296
TCONS_00010161 other downstream 3524 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 711983 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 808666 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 963878 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 964109 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010183 other upstream 1025915 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 2476671 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2863142 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3857285 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 3960451 21672949 ~ 21680620 (-) False XLOC_005333

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU297616 False 691 lncRNA 0.46 5 CI01000063 1143181 ~ 1145007 (+)