RNA id: TCONS_00010159


Basic Information

Item Value
RNA id TCONS_00010159
length 690
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_005288
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17705218 ~ 17707517 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCGTTTGAGTAGAGGTATATAAGGTGGAAGCCACGGAGTTGGTGCCCACTGCAGTAGCCAGTTTCATCCCTGCGAATCCAAACCCAAATCCCCGAAGACAACCAGAGGCTAACCATGGCATTCGCTGGTATTCTGAATGAAGCTGACATCACTGCAGCCCTGCAGGCCTGCCAAGCTGCTGACTCCTTCGACTATAAGAGCTTCTTCGCCAAGGTTGGGCTGTCCGCCAAGACTCCTGATGACATCAAGAAGGCTTTTGCTGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTTAAACTGTTCCTGCAGAATTTCTCTGCTGGTGCCAGGGCACTCACTGATGCAGAGACAAAGGCCTTCCTGAAAGCTGGAGACTCTGATGGTGACGGCAAGATTGGAGTTGATGAGTTCGCCTCTTTGGTCAAGGCATAAATGGGATCTAGCCAACACCTTATTCTGACAACCACAATCGTAGCCTGAGATCTCCACTTTTTTATCTGGGTGGCTGATTTTTATACACAATTCTGACTGTCCACTCCCATGCTGCACTCCGTCCACAACGACTGTCAACGTCACATGGTCTTTCGCATTGTAGATATGAATGTTGGTTTCTGTAAAATCTTTGGCGCTGTTTTGGGGAAAGGACAATgagaaaataaatactatttttcaTTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-945 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in hypaxial myotome region and myotome.

Ensembl:

ensembl_id ENSDART00000034914

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010158 lncRNA downstream 6906 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011114 lncRNA downstream 738410 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA downstream 738483 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00011113 lncRNA downstream 753572 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA downstream 761970 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011116 lncRNA upstream 14284 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 517017 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010171 lncRNA upstream 703094 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 703094 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010172 lncRNA upstream 703094 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010156 mRNA downstream 6549 17695986 ~ 17698669 (-) False XLOC_005287
TCONS_00010157 mRNA downstream 6701 17696107 ~ 17698517 (-) False XLOC_005287
TCONS_00010155 mRNA downstream 18814 17657224 ~ 17686404 (-) True XLOC_005286
TCONS_00010153 mRNA downstream 49535 17633354 ~ 17655683 (-) False XLOC_005285
TCONS_00010154 mRNA downstream 66723 17633398 ~ 17638495 (-) True XLOC_005285
TCONS_00010162 mRNA upstream 2908 17710425 ~ 17712498 (-) False XLOC_005290
TCONS_00010163 mRNA upstream 3138 17710655 ~ 17712393 (-) True XLOC_005290
TCONS_00010164 mRNA upstream 86767 17794284 ~ 17810543 (-) True XLOC_005292
TCONS_00010165 mRNA upstream 108208 17815725 ~ 17863467 (-) True XLOC_005293
TCONS_00010166 mRNA upstream 181948 17889465 ~ 17897134 (-) True XLOC_005294
TCONS_00010135 other downstream 706776 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 803459 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 958671 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 958902 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010121 other downstream 1050423 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010183 other upstream 1030896 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 2481652 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2868123 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3862266 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 3965432 21672949 ~ 21680620 (-) False XLOC_005333

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU297620 False 1263 lncRNA 0.42 3 CI01000063 1139352 ~ 1141143 (+)
eurasian perch (Perca fluviatilis) TU297620 True 265 lncRNA 0.41 2 NC_053133.1 15553261 ~ 15632850 (-)