RNA id: TCONS_00010135



Basic Information


Item Value
RNA id TCONS_00010135
length 1237
RNA type unprocessed_pseudogene
GC content 0.40
exon number 1
gene id XLOC_005275
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16997206 ~ 16998442 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


gtttaaaaaagaaactgGATCAGCTGGAGTGCCACTTCACATGGGATATAAAAAAAGACGATCTAGACTTCACGAATCTCCTCAACAGACTTGAAGAACAAGACAAATTGGATCTAGGAAGTGAGGAAGGGGCTGCACGAGCGCAGTGCTCAATGGGATATCTAAAATTCCTTCTCGACTGCAAAGAAGAAGCCCTTACTCACCTGTCAAGATCTGAGGCACTCATCAAAGAAAACTTTGCAGACAACAATGACAAGGCTCTTATTGTGACCTATGGAAATTTTGCCTGGATAAACTACCACATGGAGAACTACACAGAGTGCGAACGTTACCTAAAGAAGCTTCAAAACATGTATGAGACATTTCCAATTGAGTCTTCAGCTGTTCCAGAGGTGCTTGGGGAGAAAGGATGGACTTATCTTAAATTCTCTCGTAAATATTATGACAAGGCAGCAGAAGTTTTTCAAAAAGCTGTGGAACTGGATCCAACAAATAGTGAGTGGAACGCTGGTTATGCCATCACTCTGTATCGCACTGAAACTAGTCAGCCTACTATAGATTCACCTGTGATCAAACAGCTGAGAAAGGCCATTGACCTGAACCCAGATgatgatgctctgagagtccttctaGGATTTAAACTTATGAATTGTTCTAAAGAATTGATGAAAGAGTCTGAGCAGCTGGTTGAGACAGCTTTGAATCAGTCCCCAGAACATCCAGATGTCATGAGATATGTTGGAATGTACCTCAGGGATCAAGGATCTGTAGACAGTTCTATTGCCCTTCTGGAGAAAGCACTTGAAAGATCACCAAACTCAAGCTTCATATGTCATCAGTTAGCAACAtgctatgagaaaaaaaaatttacttactGACAGAAAAATGTTACAAAGCTGGAGATCATGCTCGAAATCAAAGTATATACTATTTAGAACTGGCAACTTCCCTAAAACCTTCATTTATTCTTGCAATGTGTCAGCTCAGACTTCAGTACGGAGAGAGACATGACTTGCTTAAGGCAGAGGAACAGTTTGACAAAGCATTCAAGACAGCAAAAGATAAAAATGAGCATCTGCAGTCAGTCCATTTTTATTATGCCGAGTTCCAGCAATACAGTAAAAGTCGTGAGGATTTAGCTATTAAGCATTACAAGGAGTGCTTGACAATGAATCCAGATAGTAGTGAGGGGAATAGAAGTGCAAAGAAATTGATGAAAATTGCCAACAAACATCTT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152423

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00011114 lncRNA downstream 30398 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA downstream 30471 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00011113 lncRNA downstream 45560 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA downstream 53958 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011112 lncRNA downstream 250659 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00010158 lncRNA upstream 698690 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011116 lncRNA upstream 723359 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 1226092 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010171 lncRNA upstream 1412169 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 1412169 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010134 mRNA downstream 6310 16989120 ~ 16990896 (-) True XLOC_005274
TCONS_00010133 mRNA downstream 55887 16938807 ~ 16941319 (-) False XLOC_005271
TCONS_00010132 mRNA downstream 74044 16919411 ~ 16923162 (-) True XLOC_005270
TCONS_00010130 mRNA downstream 99066 16895644 ~ 16898140 (-) True XLOC_005268
TCONS_00010129 mRNA downstream 120070 16874645 ~ 16877136 (-) True XLOC_005267
TCONS_00010136 mRNA upstream 21463 17019905 ~ 17024079 (-) True XLOC_005276
TCONS_00010137 mRNA upstream 27284 17025726 ~ 17028255 (-) True XLOC_005277
TCONS_00010138 mRNA upstream 35052 17033494 ~ 17035339 (-) True XLOC_005278
TCONS_00010139 mRNA upstream 118963 17117405 ~ 17147473 (-) False XLOC_005279
TCONS_00010140 mRNA upstream 120421 17118863 ~ 17152139 (-) True XLOC_005279
TCONS_00010131 other downstream 95447 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 250659 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 250890 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010121 other downstream 342411 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010117 other downstream 398349 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010161 other upstream 708350 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010183 other upstream 1739971 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 3190727 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 3577198 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 4571341 21569783 ~ 21569899 (-) True XLOC_005332

Expression Profile


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