AMCG00018363 (snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331)


Basic Information

Item Value
gene id AMCG00018363
gene name snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9194038 ~ 9199468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018363
TTCCGCTATGTGTCTGCCTGGAAATGTGCAGAGCTGTACACACTGGCACAAGTTCACATGGTTAAATAAAAAGACCTGAGTCGTGTAGAGGGAGACTGATGATGGCAGAGAAGGAGGACGCAGGGTCCCCAGCTGGCCCCGTGGGGCTCTCAGTGAAGGATGAAGAAAtggggatggagggagagttgggagaaaaaaaggagcaggagagggaggaggacgaggaagatgaagaagaagaagatgaggAAGCCCTGCCCCATGCTGAATTCCTGGACATCTTTGAGGAGGGACTGGCTCGGATTGTGCAGGACCCACTGCTTTGTGATCTTCCAATTCAGGTCACTCTAGAGGAGGTCAACTCTCAGGTGGCTCTGGAGTACGGCCAGGCCATGACCGTCCGAGTCTGCAAGGCTGATGGGGAAGTCATGCCCATCGTGGTGGTACAGAACGCAACCGTGATGGATCTGAAGAAAGCCATCCGTAGGTTCATGGAGCTGAAacaacagagagagggggggatcAAATATATCAGCTGGCGATACGTGTGGAGAACATTTACTCTAGTTTTTGAAGGGGAAAAGCTGGTAGATGacaaaaagaaactgaaggactaTGGCATACGAAACAGGGATGAGGTCACTTTTGCCAAGAAACTgagaaaacagtaaaaaaaagaataaagaaaaaaagaTGTGAGGAAGTGAGCAGCATGGCATGGTCCAATCTGCCCACACATTCCAGGAGGAGGTCAGAAACCCCCTAGAGACAAGACCCTCTACTGTTTGTAGAGTAGTGTTGAATACATAACGATCTTCACatggatgatgatgatttttttgtaatatattgttcctctattgttattttttcccagtATTGTATTGTTAGGTTTACATATTGCAGGATAATTCAGCAACACTTTCCAAACACTCATAcatgtgtaaaatattgtgtattgACTAATCGAATATCTAAAATCTGTCTGTAcagtgaatgtatatatttgtttaaaatgaaataaaaggcaCAAAAAAGCAGTAACTACTTGTTATTGTGAAATGGAAATTGAA

Function

symbol description
snrnp25 Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP25 (small nuclear ribonucleoprotein U11/U12 subunit 25).

NR:

description
PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K13153 SNRNP25; U11/U12 small nuclear ribonucleoprotein 25 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018363 True 1073 mRNA 0.44 7 9194038 9199468

Neighbor

gene id symbol gene type direction distance location
AMCG00018362 NA coding downstream 1097 9190764 ~ 9192941 (-)
AMCG00018352 NA coding downstream 278011 8909747 ~ 8916027 (-)
AMCG00018353 NA coding downstream 288627 8824642 ~ 8905411 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding downstream 476636 8700411 ~ 8717402 (-)
AMCG00018347 NA coding downstream 495105 8693359 ~ 8698933 (-)
AMCG00018361 cdip1,LOC100712532,LOC103374307 coding upstream 8069 9207537 ~ 9217538 (-)
AMCG00018367 NA coding upstream 160832 9360300 ~ 9380160 (-)
AMCG00018370 nprl3,LOC106601082,LOC106607369 coding upstream 248016 9447484 ~ 9470583 (-)
AMCG00018378 NA coding upstream 289462 9488930 ~ 9490012 (-)
AMCG00018379 NA coding upstream 292759 9492227 ~ 9493398 (-)
G115874 NA non-coding downstream 331661 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 674835 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 760468 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 1325412 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 1351330 7842337 ~ 7842708 (-)
G115949 NA non-coding upstream 1332 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 281442 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 328024 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 584962 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 943957 10143425 ~ 10144599 (-)
AMCG00018339 NA other downstream 517230 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 545231 8641896 ~ 8648807 (-)
G115581 NA other downstream 1420146 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2541265 6610633 ~ 6652773 (-)
G115320 NA other downstream 3242983 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 40344 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 574838 9774306 ~ 9779545 (-)
G116165 NA other upstream 719578 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 921131 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1103586 10303054 ~ 10332982 (-)

Expression


Co-expression Network