AMCG00018367


Basic Information

Item Value
gene id AMCG00018367
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9360300 ~ 9380160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018367
GCTGGCCGCAGTCGGGAGGGGCAGTGAGCATGGCTGAGCCCCGGCAGGATGGCACCAGCAGCCTGCAGAGGAAGAAGCCTCCCTGGCTCAAACTGGACATCCCTGTCACCCAGGCCTCGATGGAGGAGCCGCCCACCTTCGTCCAGCCTTTCAAGCGGCAGGGCTTCCTACGGAGCATCAGCATGCCGGCGGAGAACACGCGGCTGCCCTCCCCCTACGCGCATGAACACAGCTTCCTTTTGAACAGTGGGGCTGTGGATTGGATGCACTGTGGCTGTCACAGAGACCAGCCTGTTTGTGTGATCGTCCACAAGAGGGTGCACTTTGAGCGGATTAACACTGTGCCCATTAAGGGGCACCGCGCTGCCCGCCGCGCCCCCAGGAAACCGCAGTCGCTGTCCAAACAGTTCCTGAGGGGCACAGCGGACTGGTTCGGCATCGGCAAGGACAGCGATGCCACGCAGAAATGGCAGCGAAAGAGCCTGCGCCACTGCAGTCAGCGCTACGGCCGGCTGAAGCCACAGGTGATCCGAGAGATGGACCTCCCCAGCCAGGACAACATCTCCCTCACCAGTACTGAGACGCCCCCGCCACTCTACGTGCCCACCTCGCAGCATGGCATGCAAAAGATCGTTGACCCCCTGGCTCGTGGGCGGGCGTTCCGGATGGTGGAGGAGATCGATGGGTACAGCGTGCCCCACACACCCATCACCCCTGGTGCCGCCTCGCTCTGCTCCTTCACCAGCTCACGCTCCGGCTTCAACCGGGCGCCACGCCGCCGCAAGAGGGAGTCCGTCGCCAAGATGAGCTTCAGGGCAGCAGCGGCTCTAGTCAAGAGCACCCTGCGCCGGGCACAGAGGCGCAGCTTCACCCCCGCCAGCTTCCTGGAGGAGGACACGGTGGACTTCCCCGACGAGCTGGACACATCCTTCTTCGCCAGGGATGGGCTGATGCACGAGGAGCTGTCCACCTACGCTGACGAGGTGTTCGAGTCACCCTCTGAGGCGGCCATCAAAGAAGCGGAGGCGGGGCGGCCCGTGGATGAGGCGGATCTGTCGGGTAGCGCCCTGGACAAGAGCGAGCTGGAGAGGAGCCACCTCATGCTgCCGCTGGAGCGAGGCTGGCGCAAGGGCAAGGAGGGCAGCCTGGTGCAGCCCAAGGTGCGGTTACGACAGGAGGTGGTGAGCGTGAGCGGGCAGCGGCGGGGCCAGCGCATCGCCGTGCCCGTCAAGAAGCTCTTCGCCAAGGAGAAGCGGCCGTACGGGCTGGGCATGGTGGGCAAGCTCACCAACCGCACCTACCGCAAGCGCATCGACAGCTACGTCAAGAGGCAGATAGAGGACATGGACGACCACAGACCTTTTTTCACATACTGGATAACGGTTGTGCACTTGCTGATCACCATCCTGGCCGTGTGTATCTATGGCATTGCACCAGTGGGCTTCTCGCAGCACGAGACGGTAGATTCTGAGGCACTGATTCACCTGGGGGCAAAGTTCTCTCCCTGCATGCGGCAGGACCGGCAGGTACACGAGCTCATACAACAGAAGAGGGACAGGGAGCGCCACTCGGCCTGCTGCACCACCCTGGCAGAGTGGGTAAAGTGGCCCCAACACCCCAGTACCCCCTCCCTGGCAGGCAAGCCCCGCCAGTACGGCTCCGTGTGCCACCAGGACCCCAGGATTTGCCTGGAGCCCGCCTCAGTCGCCCCTCATGAGTGGCCTGATGACATCACCAAGTGGCCGATCTGCACCAGGGAGAACGCAGGAAACCACACCAACCTGCCACACATTGACTGTGCCATCACGGGCCGGCCCTGCTGTATTGGCACTAAAGGGAGGTGTGAGATCACCTCTCGGGAGTATTGTCACTTCATGAATGGATACTTCCACGAGGAGGCCACGCTCTGCTCTCAGGTCCACTGTATGGATGACGTGTGTGGACTGCTGCCTTTCCTCAACCCCGAGATCCCAGACCAGTTCTACAGGCTCTGGCTGTCCCTGTTCCTCCACGCTGGGATCCTGCACTGTCTGGTGTCCGTGTGTTTCCAGATGACCATCCTGAGGGACCTGGAGAAGCTGGCGGGCTGGCTGCGCATATCCATCATTTACATCCTGAGTGGCATCACCGGCAACCTGGCCAGCGCCATTTTCCTGCCCTACAGAGCCGAGGTTGGCCCAGCAGGCTCTCAGTTTGGGATCCTGGCCTGCCTGTTTGTGGAGCTCATCCAGAGCTGGCAGATCCTGGCCCGGCCTTGGCGCGCCTTCGCCAAGCTGCTGGCCGTGGTGCTCTTCCTGTTTTCCTTCGGCCTGCTGCCCTGGATCGACAACTTCGCCCACATCTCGGGCTTCATCTCGGGCTTCTTCCTGTCCTTCGCCTTTCTGCCCTACATCAGCTTCGGCCGCATGGACATGTACCGCAAGCGCTGCCAGATCATCGCCAGCCTGGTGGTGTTCCTGGGCCTGTTTGCCGGCCTGGTGGTGCTCTTCTACGTCTACCCCATCAAGTGCGAGTGGTGCGAGCTGCTCACCTGCATCCCCTTCACGGACAAGTTCTGCGAGAAGTATGACCTCAACGCGCACCTCCACTGAGGCCCGGGGCCGCGCAGGACTCAGACCAACACACTGGAGCTGGTGCTAttcccaacccccaccccagtCCTGGTCCCGTGCCCTTCACTACCACTGACGCTGGGAAAGACGGTTGCTCGAGGGAGTGGCCATCTCCAGACTTCCTCCTGTAGCTGTTTTCCGGCAaactgtgacttttttttttttaatcttgtttttctctttattcttttttttatgccaAAAAAgcttccctttgcaatcagGAGGAATTTGTTCTGAAAGTGGACAATTTCCCACTTGCCTTCAGAAGgtctgtatttttcttcattcagcAGTTTTAACAACATGAAGCCCTTGACTTAAAACACTTCGGGAAACCCACGCTGGCCCGTTTTCCACAGCGGTGTCTCCTGTCTGGACAGAATACAATCAAAGTATGGTTTTCAAACTGGACTCGACAGCAGTGTGTTTGCTGTTGTCCCCGCATTTTCTTGCAAATCCTTGAACTGACAACATCAAATTCTCTATGCACACAAGTGCACGATTTCCTTTTGTCATGTATccaatttgatttttttaagcaCTTCTCCAACCTGGCCTGGCTTCGTCTCAGAGACTTGAACTCTACcagggaggaaaaaacaactaaaccaccacaacaacaacaaaaaaaacctttggTGCCTTGTTGATAAATGTACCAACTACTGccatatttttattacactaGATTGAGCACTAAAATTGTTAACCCTTATTGTTTACTGCTACTAAAGTGGTGATGCAAGAAAAGGTAGTGTTTTAGCTACCACTTACTTACCTGTAACTGAAATACAGCTAGAGAAAAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018367 True 3421 mRNA 0.58 18 9360300 9380160

Neighbor

gene id symbol gene type direction distance location
AMCG00018361 cdip1,LOC100712532,LOC103374307 coding downstream 142762 9207537 ~ 9217538 (-)
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding downstream 160832 9194038 ~ 9199468 (-)
AMCG00018362 NA coding downstream 167359 9190764 ~ 9192941 (-)
AMCG00018352 NA coding downstream 444273 8909747 ~ 8916027 (-)
AMCG00018353 NA coding downstream 454889 8824642 ~ 8905411 (-)
AMCG00018370 nprl3,LOC106601082,LOC106607369 coding upstream 67324 9447484 ~ 9470583 (-)
AMCG00018378 NA coding upstream 108770 9488930 ~ 9490012 (-)
AMCG00018379 NA coding upstream 112067 9492227 ~ 9493398 (-)
AMCG00018375 NA coding upstream 143335 9523495 ~ 9526055 (-)
AMCG00018377 luc7l coding upstream 150678 9530838 ~ 9543701 (-)
G115949 NA non-coding downstream 144483 9200800 ~ 9215817 (-)
G115874 NA non-coding downstream 497923 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 841097 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 926730 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 1491674 7860316 ~ 7868626 (-)
G116058 NA non-coding upstream 100750 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 147332 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 404270 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 763265 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 783118 10163278 ~ 10163522 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 102098 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 683492 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 711493 8641896 ~ 8648807 (-)
G115581 NA other downstream 1586408 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2707527 6610633 ~ 6652773 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 394146 9774306 ~ 9779545 (-)
G116165 NA other upstream 538886 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 740439 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 922894 10303054 ~ 10332982 (-)
G116306 NA other upstream 955041 10335201 ~ 10342089 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00428584_00446187 RHBDF1, RHBDF1A coding CI01000113 null 428260 ~ 446644 (+)