RNA id: AMCG00018367


Basic Information

Item Value
RNA id AMCG00018367
length 3421
RNA type mRNA
GC content 0.58
exon number 18
gene id AMCG00018367
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9360300 ~ 9380160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGCCGCAGTCGGGAGGGGCAGTGAGCATGGCTGAGCCCCGGCAGGATGGCACCAGCAGCCTGCAGAGGAAGAAGCCTCCCTGGCTCAAACTGGACATCCCTGTCACCCAGGCCTCGATGGAGGAGCCGCCCACCTTCGTCCAGCCTTTCAAGCGGCAGGGCTTCCTACGGAGCATCAGCATGCCGGCGGAGAACACGCGGCTGCCCTCCCCCTACGCGCATGAACACAGCTTCCTTTTGAACAGTGGGGCTGTGGATTGGATGCACTGTGGCTGTCACAGAGACCAGCCTGTTTGTGTGATCGTCCACAAGAGGGTGCACTTTGAGCGGATTAACACTGTGCCCATTAAGGGGCACCGCGCTGCCCGCCGCGCCCCCAGGAAACCGCAGTCGCTGTCCAAACAGTTCCTGAGGGGCACAGCGGACTGGTTCGGCATCGGCAAGGACAGCGATGCCACGCAGAAATGGCAGCGAAAGAGCCTGCGCCACTGCAGTCAGCGCTACGGCCGGCTGAAGCCACAGGTGATCCGAGAGATGGACCTCCCCAGCCAGGACAACATCTCCCTCACCAGTACTGAGACGCCCCCGCCACTCTACGTGCCCACCTCGCAGCATGGCATGCAAAAGATCGTTGACCCCCTGGCTCGTGGGCGGGCGTTCCGGATGGTGGAGGAGATCGATGGGTACAGCGTGCCCCACACACCCATCACCCCTGGTGCCGCCTCGCTCTGCTCCTTCACCAGCTCACGCTCCGGCTTCAACCGGGCGCCACGCCGCCGCAAGAGGGAGTCCGTCGCCAAGATGAGCTTCAGGGCAGCAGCGGCTCTAGTCAAGAGCACCCTGCGCCGGGCACAGAGGCGCAGCTTCACCCCCGCCAGCTTCCTGGAGGAGGACACGGTGGACTTCCCCGACGAGCTGGACACATCCTTCTTCGCCAGGGATGGGCTGATGCACGAGGAGCTGTCCACCTACGCTGACGAGGTGTTCGAGTCACCCTCTGAGGCGGCCATCAAAGAAGCGGAGGCGGGGCGGCCCGTGGATGAGGCGGATCTGTCGGGTAGCGCCCTGGACAAGAGCGAGCTGGAGAGGAGCCACCTCATGCTgCCGCTGGAGCGAGGCTGGCGCAAGGGCAAGGAGGGCAGCCTGGTGCAGCCCAAGGTGCGGTTACGACAGGAGGTGGTGAGCGTGAGCGGGCAGCGGCGGGGCCAGCGCATCGCCGTGCCCGTCAAGAAGCTCTTCGCCAAGGAGAAGCGGCCGTACGGGCTGGGCATGGTGGGCAAGCTCACCAACCGCACCTACCGCAAGCGCATCGACAGCTACGTCAAGAGGCAGATAGAGGACATGGACGACCACAGACCTTTTTTCACATACTGGATAACGGTTGTGCACTTGCTGATCACCATCCTGGCCGTGTGTATCTATGGCATTGCACCAGTGGGCTTCTCGCAGCACGAGACGGTAGATTCTGAGGCACTGATTCACCTGGGGGCAAAGTTCTCTCCCTGCATGCGGCAGGACCGGCAGGTACACGAGCTCATACAACAGAAGAGGGACAGGGAGCGCCACTCGGCCTGCTGCACCACCCTGGCAGAGTGGGTAAAGTGGCCCCAACACCCCAGTACCCCCTCCCTGGCAGGCAAGCCCCGCCAGTACGGCTCCGTGTGCCACCAGGACCCCAGGATTTGCCTGGAGCCCGCCTCAGTCGCCCCTCATGAGTGGCCTGATGACATCACCAAGTGGCCGATCTGCACCAGGGAGAACGCAGGAAACCACACCAACCTGCCACACATTGACTGTGCCATCACGGGCCGGCCCTGCTGTATTGGCACTAAAGGGAGGTGTGAGATCACCTCTCGGGAGTATTGTCACTTCATGAATGGATACTTCCACGAGGAGGCCACGCTCTGCTCTCAGGTCCACTGTATGGATGACGTGTGTGGACTGCTGCCTTTCCTCAACCCCGAGATCCCAGACCAGTTCTACAGGCTCTGGCTGTCCCTGTTCCTCCACGCTGGGATCCTGCACTGTCTGGTGTCCGTGTGTTTCCAGATGACCATCCTGAGGGACCTGGAGAAGCTGGCGGGCTGGCTGCGCATATCCATCATTTACATCCTGAGTGGCATCACCGGCAACCTGGCCAGCGCCATTTTCCTGCCCTACAGAGCCGAGGTTGGCCCAGCAGGCTCTCAGTTTGGGATCCTGGCCTGCCTGTTTGTGGAGCTCATCCAGAGCTGGCAGATCCTGGCCCGGCCTTGGCGCGCCTTCGCCAAGCTGCTGGCCGTGGTGCTCTTCCTGTTTTCCTTCGGCCTGCTGCCCTGGATCGACAACTTCGCCCACATCTCGGGCTTCATCTCGGGCTTCTTCCTGTCCTTCGCCTTTCTGCCCTACATCAGCTTCGGCCGCATGGACATGTACCGCAAGCGCTGCCAGATCATCGCCAGCCTGGTGGTGTTCCTGGGCCTGTTTGCCGGCCTGGTGGTGCTCTTCTACGTCTACCCCATCAAGTGCGAGTGGTGCGAGCTGCTCACCTGCATCCCCTTCACGGACAAGTTCTGCGAGAAGTATGACCTCAACGCGCACCTCCACTGAGGCCCGGGGCCGCGCAGGACTCAGACCAACACACTGGAGCTGGTGCTAttcccaacccccaccccagtCCTGGTCCCGTGCCCTTCACTACCACTGACGCTGGGAAAGACGGTTGCTCGAGGGAGTGGCCATCTCCAGACTTCCTCCTGTAGCTGTTTTCCGGCAaactgtgacttttttttttttaatcttgtttttctctttattcttttttttatgccaAAAAAgcttccctttgcaatcagGAGGAATTTGTTCTGAAAGTGGACAATTTCCCACTTGCCTTCAGAAGgtctgtatttttcttcattcagcAGTTTTAACAACATGAAGCCCTTGACTTAAAACACTTCGGGAAACCCACGCTGGCCCGTTTTCCACAGCGGTGTCTCCTGTCTGGACAGAATACAATCAAAGTATGGTTTTCAAACTGGACTCGACAGCAGTGTGTTTGCTGTTGTCCCCGCATTTTCTTGCAAATCCTTGAACTGACAACATCAAATTCTCTATGCACACAAGTGCACGATTTCCTTTTGTCATGTATccaatttgatttttttaagcaCTTCTCCAACCTGGCCTGGCTTCGTCTCAGAGACTTGAACTCTACcagggaggaaaaaacaactaaaccaccacaacaacaacaaaaaaaacctttggTGCCTTGTTGATAAATGTACCAACTACTGccatatttttattacactaGATTGAGCACTAAAATTGTTAACCCTTATTGTTTACTGCTACTAAAGTGGTGATGCAAGAAAAGGTAGTGTTTTAGCTACCACTTACTTACCTGTAACTGAAATACAGCTAGAGAAAAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145202 lncRNA downstream 144483 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 497923 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 687449 8666737 ~ 8672851 (-) False AMCG00018339
TU145083 lncRNA downstream 711613 8642346 ~ 8648687 (-) True AMCG00018344
TU145037 lncRNA downstream 841097 8517334 ~ 8519203 (-) True G115807
TU145342 lncRNA upstream 100750 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 147332 9527492 ~ 9527736 (-) True G116065
TU145440 lncRNA upstream 394146 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 404270 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 763265 10143425 ~ 10144599 (-) True G116236
AMCG00018364 mRNA downstream 115381 9241346 ~ 9244919 (-) False AMCG00018364
AMCG00018361 mRNA downstream 142762 9207537 ~ 9217538 (-) True AMCG00018361
AMCG00018363 mRNA downstream 160832 9194038 ~ 9199468 (-) True AMCG00018363
AMCG00018362 mRNA downstream 167359 9190764 ~ 9192941 (-) True AMCG00018362
AMCG00018352 mRNA downstream 444273 8909747 ~ 8916027 (-) True AMCG00018352
AMCG00018370 mRNA upstream 67324 9447484 ~ 9470583 (-) True AMCG00018370
AMCG00018378 mRNA upstream 108770 9488930 ~ 9490012 (-) True AMCG00018378
AMCG00018379 mRNA upstream 112067 9492227 ~ 9493398 (-) True AMCG00018379
AMCG00018375 mRNA upstream 143335 9523495 ~ 9526055 (-) True AMCG00018375
AMCG00018377 mRNA upstream 150678 9530838 ~ 9543701 (-) True AMCG00018377
TU145207 other downstream 102098 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1586408 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2717028 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2736687 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3409245 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 538886 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 749400 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 927430 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 955041 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 979969 10360129 ~ 10385216 (-) True G116307

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052145 False 3541 mRNA 0.51 18 NC_007114.7 54896331 ~ 54992934 (-)
grasscarp (Ctenopharyngodon idella) CI01000113_00428584_00446187.mRNA True 3358 mRNA 0.52 18 CI01000113 428260 ~ 446644 (+)