RNA id: TU145037


Basic Information

Item Value
RNA id TU145037
length 1870
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G115807
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8517334 ~ 8519203 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATCAGTCTTGCTTTTTACCTCCATAGTTCACCTAAAAGAACCAGGTAGCAGATCAAGAGATCTAGTTTAATAATTTTTCTCCAGGATATTTTTGCTTTCAGCACCCAGTTCTGCATGTGTGCAGGTAAAAGAATTGTGCAACACCACTGTCGGGATTTACTCTAACCAACATCTTACTCCTAAGTTACAAAACAACTTGTCTGCTGAAACAGTTAATCAATTGATCCCCGTTTCCCTCTTTCCTCACAGGTGCATTGGGTACAATGCTAATGTCCATGACAAAGACAATGTTTTACACTAAAGGGGCAAAGCAGGACAATAAAACATCAGTACAATTCATTTAATGCCATACATTAGACTGAATTAAAAACTAGGatttaactgtacattttaagaCTGGATTTAACAGTGATGACTACCTTTCATGATCTAATATGGGCTGGGAGACCAATCCACTGTCTTGAAGCCACAGCACAGAGAGCGCAGTCTCCCAAATTTAGGACGCCTGGTTTTGACCAGGAGAGCATTGTCAGGAGCCGGTATACTGAAGTCCACAGGGAGCTTAACATTTTAATGGGGTCTGATGTGCTGAACTGAATATTTGTGTACATCATATTCCTCCAAGTATGACAGTCTAACTCTGCTTTTGCATTAGCCTGTGGCCTCCTGCACATCTGTCCCAGCTGGATGAGAGGGACCGCTGTGCAGGACTGCGGTCACAGTAGTTGACAGCCATGCTATGTTTGGATGCCACAGTCATTGTCTGGCTGGAGCCCTCGTGATGTATATGGCCAATTGCGCTGCTAAAGAAATGACAAGGTATTGAAACTATATAATGAACGCAAATGAAGAGAGCGTAATGGAGGGGTGGACAGACTAACAAGCTGTAATGTATCATTTGGGTGACTTGCACGATGAAGGATATGGTCACCGCTGGGCCTGTAGCTCTGTGGGTTATGAAGTCATATACCTTATGGTTATCCCGTCTTCCCAATGTAAGTTTTATACGTGATGAGTGGGAGATGTTTAGGATAGTCTGCTTAGTAAAATCGAAGAACCTAATCTTCTAAAATCTTGGAAGTGTCCCAATACTGCAGTATACATAATCTGAATATTGGTGTATTTACAGTGAAGGACTGAAAATATATAGGAGTTAGAAGTGGAAACGAGGCTGTTGTATTCAGCAACAATTGTTCCTCAATCACTGATCAGATTAAAACGTTCACTATACACTGATCTGTACGCTTTATATTCCGAAAAATGCAAGGGAGTCGGTATTTGTAATGTTCATTACCACTTTTTGAGAATTACATTGTACTAAGGAGCTGTACAATTGATTGAAACTAcaacattttgtgaaatattcattGTCATCGAGAAATGACCATGAATAGGCTGCACGGGAAAACTTGCCTTACAGTTAATTTTTATTATAAGGTAAGAACAAGGGATACTTATActtatttcttcaaaatgttagtgaaaatgtttttagttgttttttatggGTTCtgttaattaatgattatatcAGACTCTGCTGTGTAATGCAAGTTTTTCTTGAAGTTGCTGTCTTTTTTCTTATAGTAAACGCTAACATGTTCtacggttttgtttttaacatcttcaatatattaaatgttattcaCTTGGCGGTGTcgtgcaattaaaatattggGTTTTTAGTTCCTGATAGGTGTATCGTGCCTCAAGTGTAATTGTCAGTGGAAGAGGTAATCTAAAACAATGGCAGTGTTTGTTTCCAAAACAATTATCGTGTAATCTTGTTGAGATAActagaaaacaacacattggTTACTGTAACCGTCTGTCTAAGGAATCCactactgtatttatataaatcag

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144949 lncRNA downstream 83764 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 648708 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 674626 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 774587 7742541 ~ 7742747 (-) True G115580
TU144762 lncRNA downstream 775124 7741974 ~ 7742210 (-) True G115579
TU145083 lncRNA upstream 123143 8642346 ~ 8648687 (-) True AMCG00018344
TU145067 lncRNA upstream 147534 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 342670 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 681597 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 961707 9480910 ~ 9482152 (-) True G116058
AMCG00018329 mRNA downstream 47705 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018331 mRNA downstream 68390 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018328 mRNA downstream 94432 8409902 ~ 8422902 (-) True AMCG00018328
AMCG00018330 mRNA downstream 126194 8363373 ~ 8391140 (-) True AMCG00018330
AMCG00018326 mRNA downstream 157178 8343130 ~ 8360156 (-) True AMCG00018326
AMCG00018334 mRNA upstream 400 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018343 mRNA upstream 77890 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018341 mRNA upstream 106674 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018344 mRNA upstream 122693 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018339 mRNA upstream 147845 8667048 ~ 8676808 (-) True AMCG00018339
TU144767 other downstream 743442 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1874062 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1893721 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2566279 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3150580 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 720609 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1399843 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1610357 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1788387 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1815998 10335201 ~ 10342089 (-) True G116306

Expression Profile