AMCG00018326 (arl6ip1,LOC107658451)


Basic Information

Item Value
gene id AMCG00018326
gene name arl6ip1,LOC107658451
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8343130 ~ 8360156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018326
ATGGCTGACGTCGACAACAAAAGCTCCAATCTGCTGGCAACAGAGACTGCCCAGCTGGAAGAGCAGCTGCAGGCTTGGGGAGAGGTGATCCTGGCTGGTGACCAAGTCCTACGCTGGCAGAAGCCCTGGTTCCCTGCTGCCCTCATGGGTGCCACCACCCTCCTCTTCCTGATGATCTACTACCTGGACCCCTCTGTGCTGACCGGGGTGTCCTGCATGGTGATGGTCCTGTGTCTGGCGGACTACCTGGTGCCCACCCTCGCTCCCAGAATCTTCGGTTCCAACAAGTGGACCACTGAACAGCAGCAGCGCTTCCATGAGATCTGTGGCAACCTGGTGAAGACCCAGCGCCGTGTAGTGGGCTGGTGGAAACGCATCTTCGCTTTGAAAGAGGAGAAGCCGAAGATGTACTTCATGTCTGTGATCATCACTCTGGTGGTGGTGGCCTGGATTGGACAGCAGGTTCACAACCTGTTCCTGACCTACCTTATTGTGAgcttcctgctgctgctccccGGGCTGAACCAGCACGGCTTCATCAGCAAGTACGCCGCCATGGCCAAGAGAGAGATCAACAAACTGCTCAagcagaaggagaagaagaatgAAACGAGGCCAATGAAATCAGCCTACAGACTCTCCTCGTCCCTCGATCACCAAGCGGATGCCTTCCTTCTGGAGAGGGCTGGGCTGGGGGTGCAGCAACGCACCGCGAGCCCTTTCTCCTTCCTCTTTCCGCCATATTGCAGAACTGGCATCATGGTGCGCATGAATGTTCTCGCCGATGCGCTCAAAAGCATCAACAATGCAGAGAAACGTGGGAAACGCCAGGTTCTGATCCGGCCCTGCTCCAAGGTCATCGTGCGCTTCCTCACCGTCATGATGAAGCACGGCTACATTGGCGAGTTCGAGATTATCGACGATCACAGAGCTGGGAAAATAGTTGTTAATCTCACAGGCAGGCTGAACAAGTGTGGTGTCATCAGCCCCCGATTTGATGTGCAGCTTAAGGATTTGGAGAAGTGGCAGAACAACCTGCTGCCCTCTCGACAGTTTGGGTACATCGTCTTGACCACCTCGGCTGGCATCATGGACCATGAAGAAGCCAGACGAAAACACACAGGAGGCAAAATCCTGGGATTCTTTTTCTAAAACATGTAAAGGCACctgcaaataaaacagtttCCACTGGACTTGGATGAGTCGTGTGCTAATTTGTTATTTGGCTATGAATTGAGCAGCTGGTTCCATTTTCTTGTTCAGTGTAAATTTGAGTTTTGCAGCTTCCTGGCTGTGTGTGGGGTTACAGCTTGTATCTTTGTTGCGATTCCTGCTTTGTTTGTGTTGGTCAATTTCCTGAACTGATGCTTGACAGGCAAATTCCCAGTCGGTTTGAAACCTTCCTTTGTCTCCTTGGTTCTAGTTGCTGAACATGCCTAGTTCCCCAGAAGCCTTTTCCAGCACTCTgtaatgtgatttaatgtacatttttatattttatattcttaataGACTACATTTGCTCACAGAATAATTTTGTAGAAGCACTTTTCTCCTTGTCCACGTGTGGGCAGAAGTCttccatttaaacatttcagtcaTCCTGGTTTTGCCAGGTTCCATAAAAAgctttattcataaaatatgaacattCCAGTTGGGGAGACTATTTATGAAATTCATTTTCTAGGTTTTAGTATTCTGAAGGTAGTTCTTGAATTTTTACTGTTGTGGCAAACCCTTGAATTTCAGTGGTTGTCCTGTAACCCTTTATTTGGGGTTAATTCTGTGAGCTTCATTGTGACCCCTTATTGGGACATGGATTCATATCAAATTTTTTAGAGTAGGGGTCTAGTGACATGTCACTCCCCATCCAGCAGTCGTCTCTATTGTATAGTAATTCAGTTGTTCTCAAGCACCAGCTCAGAGAAAGGTAGCCTTGGTTAGTGTTTTCCACAGGCAGTTAGAGCTGGTTTCCTGGTTGACTTTTTAGAGCTGAGGGTTGAGTGGCCAGCTGGCAAATTTTAGATTGAAGCATCTTTtgtaatgaataatttaattttaatttaggctgttaaaatataaatatcaaagcatttaaaattaatgaataaaaaagaaatctggtTCTAAAAGCGTCTGCGTTCGCCCAGAGCGCTGTAATAATTGAGTGCTGGGAACTGGCAGGGAATGTCTTGTGTTGTGGAGctgttctgtaattaaaattagaGGCGCTGGAAAATGTACGCATTCAATCAAAAAAGATGACAAAACACTGCTCTGTAATTAGGGTCGTTCTTGGGATGGCAACGCAGAAACTGGGGGGGAGTTGCTTTTCGGTACTCCGGTATTTGAAAAGTTGTACCTTTAACGAAGTGCATGCTGAGAGAGTGCGCTGTGGTGGAGCTGTAAGGCAACAGCTGCTGAGTGGAGTTACCTTGGAGCTCCATGGAAAGTGTTTGAGGTGAGATGCTGTGAGCACCTCAGTCTTTGGGCTTTTCTTTGCATTTAACACGCTTCTGAGGGTAGGAGGTTtatgcttttgtatttgttctgcaGTATTTCCCCATCCCCTTCTCAACATATACTTTTTGggagattgtatttatttcctcccTTGCTTCATTTAAACATAATGATGAAAAACAGCCTTTCAAATTATTCCTACATGTGAATTCCAACTGTAATTTCTGTATCCCATTATCCTTCATTATCCTATCCCACAGTCGCCCATATCTTGCAATCTTCCCGACTCACTGAATTACATCTTGGCACAGCCGCCAATGTTGCTCTGATGTcggttttatatttgaaatgagcGGTGAGGGGTAGAAGGGCCAAGTCGTGCGATGTAATTCAGATAATTTCCTCCCAGTTCAGGGTGAGTAACACCGCAGTCTTCTGAAGATGCTCACCTGTCATCATCGTTGTGACGAGAGACTCCCAGTCTCTTCCTGGCTTGGCTTTCAAGTCTTGTCCTTTCACtagtcttcctgtttcctggcAGGATGAGCGGACAGACGGCGCTGTCTGGATCTCTCGCCATATGCAAGTTCTAAATGTATCatgtaaagatttgtttttcttccccagtTAACTGGTTCACAAAAAGGTCATTGTTCAGAAGTGAAAAGATTTGTGATTAATCTTACAACCATGGTTTTCCAATCCCCCTTCCACAAAGTTTCTTGTCTTTATCCCTTTTACTCAAGTTTCTTCTTAGTTGTGTTTTGCATCATCAATGCTCCCTTTATAGGCACATATATCCACTTCTATAATCCTAGTTTTTCATCTGCTACTATTCTCTCGTGGCACCTTTGTTTCTGAGAGCCATTGATGTAATTAGGGTTGGTGGGGTCAAGAGATGGATATCCATTGGAATGGAGAGAGATCTGTTGTGGTCACAGTAATGTTATCGGTGATCGCACTGCACGCTCCTAACGGTATGAATGGTATCTTGTTTGCAAATgcctgtacatttgttttcatgttctgtCTGCTATAAGACGACGCTGCATGGTGTCTTGTACATGTTAAGAGTTTCTATCAATATCCCATTAATGCACGCTGTGTCTTGCACATGTACAAAACCTCAAACAGTTTTTTAGACTTTCCATTAAAGAAACCAACCAATGGTAAATCAAA

Function

symbol description
arl6ip1 Acts upstream of or within neural crest cell migration and retina morphogenesis in camera-type eye. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; central nervous system; hypochord; optic cup; and retina. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 61. Orthologous to human ARL6IP1 (ADP ribosylation factor like GTPase 6 interacting protein 1).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6-interacting protein 1

GO: NA

KEGG:

id description
K24864 ARL6IP1; ADP-ribosylation factor-like protein 6-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018326 True 3645 mRNA 0.45 12 8343130 8360156

Neighbor

gene id symbol gene type direction distance location
AMCG00018323 NA coding downstream 202884 8123318 ~ 8140246 (-)
AMCG00018322 NA coding downstream 220934 8119988 ~ 8122196 (-)
AMCG00018316 NA coding downstream 261875 8079235 ~ 8081255 (-)
AMCG00018315 NA coding downstream 269183 8068201 ~ 8073947 (-)
AMCG00018314 NA coding downstream 297237 8040510 ~ 8045893 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding upstream 3217 8363373 ~ 8391140 (-)
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding upstream 49746 8409902 ~ 8422902 (-)
AMCG00018331 NA coding upstream 83039 8443195 ~ 8448944 (-)
AMCG00018329 coq7,LOC106564609 coding upstream 103163 8463319 ~ 8469629 (-)
AMCG00018334 NA coding upstream 159447 8519603 ~ 8541039 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 474504 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 500422 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 600383 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 600920 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 608746 7734097 ~ 7734384 (-)
G115732 NA non-coding upstream 69970 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 157178 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 501717 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 840644 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1120754 9480910 ~ 9482152 (-)
G115581 NA other downstream 569238 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1690357 6610633 ~ 6652773 (-)
G115320 NA other downstream 2392075 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2976376 5356846 ~ 5366754 (-)
G115183 NA other downstream 3038701 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 281740 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 306581 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 879656 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1414150 9774306 ~ 9779545 (-)
G116165 NA other upstream 1558890 9919046 ~ 9924582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location