AMCG00018323


Basic Information

Item Value
gene id AMCG00018323
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8123318 ~ 8140246 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018323
ATGCTTACCCGAGTCCGTCTCCATCCGAGCCGGGGTGAGGCTGTCCTGAAAACCGTCCCGATGCGAGCGGGGCAAATGCCGGATCCCGGGTTTCTGTCCCAGGCGCTGTCCCGTCCTGCCTCCTGTAATCCGACCCCGGTGTCAGCGCCGGTGCAGCGCCCCCGGCGGAGGAGCAGGGCAGCCACGGCGGGAAAGGGAACTGCGAAACCAGCTTTCAAAAGTCTGCCTGACCCGCTCAGCCAAGTCCAGCCCGGAACAGTCGGCACGGGGATCCGGCGGCACGTCCAAGTGAGCCCATGGCACCgtgagagaggagagcagcAGAGACGGAGGGAGGAACGCCTCAGCATGTCACACTACTCCCGAGACAGGGTGCTCAACCCGGGGTACCACCAATCTGACACCCTGGAAATGGACAGGAGCCCCTCCTGGAGGTCTCAGCACGAGAATCCCTATGCCAGCGACGGACCCCTTTATGATGAGGAGCGAGGTCCACACCCCTGGGGCAGAGGGCAGGGAGCCCGGGGTCCAACTCAGTACCTGCCTCTGGGACCCATGCCCACCAGAGACCACCGTGGCCAGGACAACCTAGGGTTCGAAAATGACACGGTCATGGACTACAACTCCTTTGGTAATTGGCGTCAAGAACACCCCATGAATTACCAGGACCAGCCTGATTCGGCAGAGAGAGCGGGCAGTGTAATGCGGCGGCGAGCCTCTCGGAGAAGGAGTCTGTTCCCAATTGGTACCATGAGTGCCACAGCCCTGGGCAAACTGGGGCTGAGCGAGGAGGACTTCCAACAGGAGATCGAGGAAGAGGAGCGAGACCTAGTGGCCGAGCTGGCAGACAAGTCCACACGGGACAGGATCCGCGCCATCCGTCAGCTGCCCTGGAGCCTCAAGGACAAGAGCAATATCAGGAAACAAGTGCTTCTGCTCAAGACATCCAAGAGACGGCTGCAGCTAACATGCTGTACAGACTGCAGCAGCAGGGTCTCTGTGTCATTCCGCAGGTTTGCAACCCAGGTGTCGGCAGTGCGGCAGGTTCTGGTGCTGTGGCACAGCACCCTGAAGGAGATTGGGGGCAAGTGGCTGCTCATGTTCAACGTCTTCTCTTTCCTGGTGAACTTTGGCTTCATCACCGTGCCACAGCTGCTGGACCCACCAATAGGGGGAAGCGTGGGGTTCAGAGGCCTAGAGATCCTCACTGGAGCTGGTTATTTCAACCAAACGGTGCTGTATTATGGGTCCTACACTAACAGCTCAGTGTCGGGACACAGCGCCAGCCAGAACAGCACCCTGCCTCAGTATGACATGCAGTTGTCCTACTTCTTCACCATGGGGGCCTACCTGGTGCTGTGTGGCCTCAGCCTCATATACAGTGCGGCACACTCTTTCCGGGAGAACTTTGTGCTGGCAGGTGAGGTGGCAGGCAGCGCCTCACATCTTCTGTGCAGCTGGGACTTCAGCGTGGTGAATGAGAGGGCTGTGCAGCTCCGGCGCAGCAACCTCCATGTCCAGCTCAAGGAGACCCTATCTGAGAGGGTCCAGCTACAGGCTGTCCTGTCCATCTCAGAGAAACTGCAGCATTTTGGGATCCACCTGGCTGCCTGGTTCATCTCCAGCAGTCTAGCAGTGGGCTCTTGCAGCGCAGTCTACTTCCTATGTGAGTTCAACCTGAAGCTGATCACAGACTCCAACAGTCCAGAGCAGGAGGCCGCCACTCTACTGCTACCCATCGTGGTGTCGCTCATCAATCTGCTGGTCCCGCTGCTCTACACACTGCTCAGGAAGATGGAGCCCTTCACCATCGCACGCCACCAGATCTACGCACTCATCATAAGgAACGTGTTACTCAAGATGTCAATTCTGGGGGTGCTGTGCTACTACTGGCTGGAGAAGGTCGCCGAGTCCAATATTGGGTGCTGGGAGTCTTTTGTCGGGCAAGACCTGTACAGACTCATCATGATTGACTTCCTCTTCTGTCTCCTGGGCTCCTTCTTTGGGGAGTTCCTGCACAGAATCATCGGCACACGGTGTGCAAAGAGCCTTGGGGTTCCGGAGTTTGACATCGGGCGGAACGTTCTGGACCTCATCTACGCCCAGACGCTTGCCTGGATTGGGATTTACTTTGCTCCACTGCTACCTGTTATGCAGATCATCAAATTGTTCCTAATCTTCTACCTAAAGAAGGTGAGCCTGATGCAGAACTGTCAGCCCCCCCGGCGCTCGGGCCGCGCGGCGCAGATACAGACCATATTCATCCTGCTGCTGTTCTTCCCCTCATTCGTGGGGGTGCTATCTTTCGTGGCGGTCACCATGTGGAGACGCACTCCCTCCCCGTACTGCGGCCCGTTCCGGGGGCTGTCCTTACCCTTCGAGGCAGTGTCCAAGTGGATGGAGAGGGTGAATATCTTCCCCGAATTCCGCTGGGCGGTGTGGATCTACAACAACCTCATCCAGAGTGCGCTCTTCTTCCTCATCCTCACCCTCATCATCCTAATCCTGATATACGTAAACTGGCAGATTGTGCGGGGACGTAAAATGTTGATATTCCTCCTGCGAGAGCAAATCATTAATGAGGGGAAGGACAAGCACTTTCTCCTGGAGAAGCTGAAACGGCTGCAGAGCTCCAAGCAGACGAAGCCGCTCCGACGGCCTGACCAGAGGACGCAGAGTGCGGCGCAGGCTCCGCTCAGTGTTCCCCCTGGGCCAGCTCCCTTACGCACTTTCCAGAGAGAAGACCAAGTGGACCCAGATTACTATGGGGTGTCTGAGAGGCAGCCCTTCCAGGAAGAAGGCACAGTGCCCCCCGCCTCCAGCGCACTGATACAGGCCATGCTCGCACGCAGGCAagctgaggaagaggaggaagaggagggatACTGAAGACAAACTCCCTTTCACAGCACCTCTGTCCTGGAACTGACTAAAGTGACCAGCTAATCAAAGACAGCAACGTATTGACAATCTCCTCAGCATGGGTGGTAGATAcaggggggggttgggggggcaaTACAATTGATGtatggattttaattattatttattaaatatcacTGATCAACAGTTTGACCAGCCCCATGTCCCTGGCATTCAGCTTTGAATCTCTCCTAGGGAGGGCACCCCTGTGCACACACTCCCTGAGTACTAGTGGGACTCAAACCATCTCCAGTTTTCTGCTCTGAAACGCACAAAACGTAATTAAATAGAATTATCCCAATTAagattattaatgtaattatatatatatatatggagacaGTTTTCAACtaaagtgaaatattttaatatcttcctgtttgtttgtttaattgtagcacaaatgtttatttttaaatgtatttaaatacagactTCGAAATGAaagctgtttgtgtgttttaataaggatgtcacatccctctctcccacaTACACCCTTGCTGTGTCCGACTCCAGAGGGCCCCATACAGCAGGTGGACTCCGGCCCAGACTCATTTTGGTGCCACCAAATACATGTAGCCATCGCACTCGTTAAGGGAAGCCGACCGAATTTGGAGGAGCTACGTAAGCCATCTTTAGCTGCGGGTGCAGTCCCAATAATTATGGCATCggtatttcaaaataacatgtttttaaagctaTTAAACGGTTTAAGAATTATTGTCTATAACCCAGCAAGAGCTTCAAGGCTCACTGAAAATTTGattgtgtttactgttattttttgtttttctcatgctCATTTAATTAATCACCTGCTACaggttgaaatatgtatttactggaaacataatttaacattttattttattaaatac

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018323 True 3803 mRNA 0.53 24 8123318 8140246

Neighbor

gene id symbol gene type direction distance location
AMCG00018322 NA coding downstream 1122 8119988 ~ 8122196 (-)
AMCG00018316 NA coding downstream 42063 8079235 ~ 8081255 (-)
AMCG00018315 NA coding downstream 49371 8068201 ~ 8073947 (-)
AMCG00018314 NA coding downstream 77425 8040510 ~ 8045893 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding downstream 150449 7944117 ~ 7972869 (-)
AMCG00018326 arl6ip1,LOC107658451 coding upstream 202884 8343130 ~ 8360156 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding upstream 223127 8363373 ~ 8391140 (-)
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding upstream 269656 8409902 ~ 8422902 (-)
AMCG00018331 NA coding upstream 302949 8443195 ~ 8448944 (-)
AMCG00018329 coq7,LOC106564609 coding upstream 323073 8463319 ~ 8469629 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 254692 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 280610 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 380571 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 381108 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 388934 7734097 ~ 7734384 (-)
G115732 NA non-coding upstream 289880 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 377088 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 721627 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 1060554 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1340664 9480910 ~ 9482152 (-)
G115581 NA other downstream 349426 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1470545 6610633 ~ 6652773 (-)
G115320 NA other downstream 2172263 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2756564 5356846 ~ 5366754 (-)
G115183 NA other downstream 2818889 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 501650 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 526491 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1099566 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1634060 9774306 ~ 9779545 (-)
G116165 NA other upstream 1778800 9919046 ~ 9924582 (-)

Expression


Co-expression Network