RNA id: AMCG00018326


Basic Information

Item Value
RNA id AMCG00018326
length 3645
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00018326
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8343130 ~ 8360156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACGTCGACAACAAAAGCTCCAATCTGCTGGCAACAGAGACTGCCCAGCTGGAAGAGCAGCTGCAGGCTTGGGGAGAGGTGATCCTGGCTGGTGACCAAGTCCTACGCTGGCAGAAGCCCTGGTTCCCTGCTGCCCTCATGGGTGCCACCACCCTCCTCTTCCTGATGATCTACTACCTGGACCCCTCTGTGCTGACCGGGGTGTCCTGCATGGTGATGGTCCTGTGTCTGGCGGACTACCTGGTGCCCACCCTCGCTCCCAGAATCTTCGGTTCCAACAAGTGGACCACTGAACAGCAGCAGCGCTTCCATGAGATCTGTGGCAACCTGGTGAAGACCCAGCGCCGTGTAGTGGGCTGGTGGAAACGCATCTTCGCTTTGAAAGAGGAGAAGCCGAAGATGTACTTCATGTCTGTGATCATCACTCTGGTGGTGGTGGCCTGGATTGGACAGCAGGTTCACAACCTGTTCCTGACCTACCTTATTGTGAgcttcctgctgctgctccccGGGCTGAACCAGCACGGCTTCATCAGCAAGTACGCCGCCATGGCCAAGAGAGAGATCAACAAACTGCTCAagcagaaggagaagaagaatgAAACGAGGCCAATGAAATCAGCCTACAGACTCTCCTCGTCCCTCGATCACCAAGCGGATGCCTTCCTTCTGGAGAGGGCTGGGCTGGGGGTGCAGCAACGCACCGCGAGCCCTTTCTCCTTCCTCTTTCCGCCATATTGCAGAACTGGCATCATGGTGCGCATGAATGTTCTCGCCGATGCGCTCAAAAGCATCAACAATGCAGAGAAACGTGGGAAACGCCAGGTTCTGATCCGGCCCTGCTCCAAGGTCATCGTGCGCTTCCTCACCGTCATGATGAAGCACGGCTACATTGGCGAGTTCGAGATTATCGACGATCACAGAGCTGGGAAAATAGTTGTTAATCTCACAGGCAGGCTGAACAAGTGTGGTGTCATCAGCCCCCGATTTGATGTGCAGCTTAAGGATTTGGAGAAGTGGCAGAACAACCTGCTGCCCTCTCGACAGTTTGGGTACATCGTCTTGACCACCTCGGCTGGCATCATGGACCATGAAGAAGCCAGACGAAAACACACAGGAGGCAAAATCCTGGGATTCTTTTTCTAAAACATGTAAAGGCACctgcaaataaaacagtttCCACTGGACTTGGATGAGTCGTGTGCTAATTTGTTATTTGGCTATGAATTGAGCAGCTGGTTCCATTTTCTTGTTCAGTGTAAATTTGAGTTTTGCAGCTTCCTGGCTGTGTGTGGGGTTACAGCTTGTATCTTTGTTGCGATTCCTGCTTTGTTTGTGTTGGTCAATTTCCTGAACTGATGCTTGACAGGCAAATTCCCAGTCGGTTTGAAACCTTCCTTTGTCTCCTTGGTTCTAGTTGCTGAACATGCCTAGTTCCCCAGAAGCCTTTTCCAGCACTCTgtaatgtgatttaatgtacatttttatattttatattcttaataGACTACATTTGCTCACAGAATAATTTTGTAGAAGCACTTTTCTCCTTGTCCACGTGTGGGCAGAAGTCttccatttaaacatttcagtcaTCCTGGTTTTGCCAGGTTCCATAAAAAgctttattcataaaatatgaacattCCAGTTGGGGAGACTATTTATGAAATTCATTTTCTAGGTTTTAGTATTCTGAAGGTAGTTCTTGAATTTTTACTGTTGTGGCAAACCCTTGAATTTCAGTGGTTGTCCTGTAACCCTTTATTTGGGGTTAATTCTGTGAGCTTCATTGTGACCCCTTATTGGGACATGGATTCATATCAAATTTTTTAGAGTAGGGGTCTAGTGACATGTCACTCCCCATCCAGCAGTCGTCTCTATTGTATAGTAATTCAGTTGTTCTCAAGCACCAGCTCAGAGAAAGGTAGCCTTGGTTAGTGTTTTCCACAGGCAGTTAGAGCTGGTTTCCTGGTTGACTTTTTAGAGCTGAGGGTTGAGTGGCCAGCTGGCAAATTTTAGATTGAAGCATCTTTtgtaatgaataatttaattttaatttaggctgttaaaatataaatatcaaagcatttaaaattaatgaataaaaaagaaatctggtTCTAAAAGCGTCTGCGTTCGCCCAGAGCGCTGTAATAATTGAGTGCTGGGAACTGGCAGGGAATGTCTTGTGTTGTGGAGctgttctgtaattaaaattagaGGCGCTGGAAAATGTACGCATTCAATCAAAAAAGATGACAAAACACTGCTCTGTAATTAGGGTCGTTCTTGGGATGGCAACGCAGAAACTGGGGGGGAGTTGCTTTTCGGTACTCCGGTATTTGAAAAGTTGTACCTTTAACGAAGTGCATGCTGAGAGAGTGCGCTGTGGTGGAGCTGTAAGGCAACAGCTGCTGAGTGGAGTTACCTTGGAGCTCCATGGAAAGTGTTTGAGGTGAGATGCTGTGAGCACCTCAGTCTTTGGGCTTTTCTTTGCATTTAACACGCTTCTGAGGGTAGGAGGTTtatgcttttgtatttgttctgcaGTATTTCCCCATCCCCTTCTCAACATATACTTTTTGggagattgtatttatttcctcccTTGCTTCATTTAAACATAATGATGAAAAACAGCCTTTCAAATTATTCCTACATGTGAATTCCAACTGTAATTTCTGTATCCCATTATCCTTCATTATCCTATCCCACAGTCGCCCATATCTTGCAATCTTCCCGACTCACTGAATTACATCTTGGCACAGCCGCCAATGTTGCTCTGATGTcggttttatatttgaaatgagcGGTGAGGGGTAGAAGGGCCAAGTCGTGCGATGTAATTCAGATAATTTCCTCCCAGTTCAGGGTGAGTAACACCGCAGTCTTCTGAAGATGCTCACCTGTCATCATCGTTGTGACGAGAGACTCCCAGTCTCTTCCTGGCTTGGCTTTCAAGTCTTGTCCTTTCACtagtcttcctgtttcctggcAGGATGAGCGGACAGACGGCGCTGTCTGGATCTCTCGCCATATGCAAGTTCTAAATGTATCatgtaaagatttgtttttcttccccagtTAACTGGTTCACAAAAAGGTCATTGTTCAGAAGTGAAAAGATTTGTGATTAATCTTACAACCATGGTTTTCCAATCCCCCTTCCACAAAGTTTCTTGTCTTTATCCCTTTTACTCAAGTTTCTTCTTAGTTGTGTTTTGCATCATCAATGCTCCCTTTATAGGCACATATATCCACTTCTATAATCCTAGTTTTTCATCTGCTACTATTCTCTCGTGGCACCTTTGTTTCTGAGAGCCATTGATGTAATTAGGGTTGGTGGGGTCAAGAGATGGATATCCATTGGAATGGAGAGAGATCTGTTGTGGTCACAGTAATGTTATCGGTGATCGCACTGCACGCTCCTAACGGTATGAATGGTATCTTGTTTGCAAATgcctgtacatttgttttcatgttctgtCTGCTATAAGACGACGCTGCATGGTGTCTTGTACATGTTAAGAGTTTCTATCAATATCCCATTAATGCACGCTGTGTCTTGCACATGTACAAAACCTCAAACAGTTTTTTAGACTTTCCATTAAAGAAACCAACCAATGGTAAATCAAA

Function

GO: NA

KEGG:

id description
K24864 ARL6IP1; ADP-ribosylation factor-like protein 6-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144791 lncRNA downstream 474504 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 500422 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 600383 7742541 ~ 7742747 (-) True G115580
TU144762 lncRNA downstream 600920 7741974 ~ 7742210 (-) True G115579
TU144760 lncRNA downstream 608746 7734097 ~ 7734384 (-) True G115577
TU144949 lncRNA upstream 69970 8430126 ~ 8433570 (-) True G115732
TU145037 lncRNA upstream 157178 8517334 ~ 8519203 (-) True G115807
TU145083 lncRNA upstream 282190 8642346 ~ 8648687 (-) True AMCG00018344
TU145067 lncRNA upstream 306581 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 501717 8861873 ~ 8862377 (-) True G115874
AMCG00018323 mRNA downstream 202884 8123318 ~ 8140246 (-) True AMCG00018323
AMCG00018322 mRNA downstream 220934 8119988 ~ 8122196 (-) True AMCG00018322
AMCG00018316 mRNA downstream 261875 8079235 ~ 8081255 (-) True AMCG00018316
AMCG00018315 mRNA downstream 269183 8068201 ~ 8073947 (-) True AMCG00018315
AMCG00018314 mRNA downstream 297237 8040510 ~ 8045893 (-) True AMCG00018314
AMCG00018330 mRNA upstream 3217 8363373 ~ 8391140 (-) True AMCG00018330
AMCG00018328 mRNA upstream 49746 8409902 ~ 8422902 (-) True AMCG00018328
AMCG00018331 mRNA upstream 83039 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018329 mRNA upstream 103163 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018334 mRNA upstream 159447 8519603 ~ 8541039 (-) True AMCG00018334
TU144767 other downstream 569238 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1699858 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1719517 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2392075 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 2976376 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 879656 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1558890 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1769404 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1947434 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1975045 10335201 ~ 10342089 (-) True G116306

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050074 False 721 mRNA 0.43 5 NC_007114.7 26345732 ~ 26351656 (+)