RNA id: AMCG00018329


Basic Information

Item Value
RNA id AMCG00018329
length 1404
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00018329
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8463319 ~ 8469629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAGCCTAACACAGCTGTTTGGGAAGTGACGTCATTAGAGAGCGCCGGGCTGTCATGCACTGGTCCAACATGCACGACACCTCCGCGTTCAATGACTTTCTGTCTGCGGATTAATCCTCTTTAACCGTCACAATTATTGGACACTAAAAGGCTTCAGAAATGCAGCGAGCGCTAGGATCCCCTGTGCTGTTGAGCGAATTGAGGCCGGTTTTCTGCTCGGCTTTGGGTGCACGGCAGCTTTGTTTAAATGATCGTAAAGGTGTTCAGATGTGCAGAGCACAGGGGCTGCCCCTCTCACGGAGCTACAGCGTGCTGCCGCCGGTCCGAGACTGCGCCGAGAAGGCCATGCTGGACAGGATGTTGCGGGTCGATCACGCAGGCGAATACGGAGCCAACCGCATTTACGCTGGGCAGATGGCAGTGCTGGGAAGGACTCAGGCGGGACCAATTATTCAGCACATGTGGGATCAAGAGAAAAACCACCTGAAGGTGTTCGATGACCTCTTGGCCGAGAACAGAGTGAGACCCACCGTTCTGATGCCATTCTGGAACATCGCAGGGTTCGTCCTGGGTGCGAGCACTGCCATGCTGGGGAAGGAAGGGGCCATGGCCTGCACAGTGGCCGTAGAGGAGAGCATCTGTGAGCACTACAACAGCCAGATCAGAACActcatggaagaagacccagacAAATACAAAGATTTACTGCAAttaatcAAGAAGTTCCGGGATGAGGAAATGGAACACCACGATACAGGAATGGAACACGACGCAGAGATGGTGAGTCTGACTTTGAGCAGGACAGGCACCGGCATACTGGCTTTTGAAGAATGCAATACAAGTGGGCTGTAAGGCAGCGATATACATGTCTGAACGCATCTAGAACCAAAGCTGAAAGAAAACCATTAAGGTTATGTTTTGGATTTGTGTCAATGATGTTTAGTCAGTTTAAGTGATTTTGGCGAGTTTCCCTGCTTTGGATAGATGTAACCATTATACCGGCCCTTTTGATTTTGAGGGTCAGCGAACTGTAAATGTCATGATGCTAAACTCTTGATGAGACCGTCGTCCTGCACTGAAGTGTTTAGGGTGTAGTTGTGCCAGATCTTCAGGTAATATAGAGGGCTGCTGCTACAGTACTGCTTATTGTGGGAAATGGGTTTACTTTACAGCATGCGCATTGAATTCAGTTCTGGTTACCATGCTCTCTGTTTGATTCTATGGAAAAACAGTTATCTACCCAGaagaataaatgtgatttaaaaaaatagataaatatatttatttatttatatattggagAAAGTCAGGCAAGCAGGGTGACCTTTCAAGtggaatatgttttttaatctgcaatCGTAAATCTGAGTTGGAGCAATTaaatctgccttttttattacata

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144949 lncRNA downstream 29749 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 594693 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 620611 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 720572 7742541 ~ 7742747 (-) True G115580
TU144762 lncRNA downstream 721109 7741974 ~ 7742210 (-) True G115579
TU145037 lncRNA upstream 47705 8517334 ~ 8519203 (-) True G115807
TU145083 lncRNA upstream 172717 8642346 ~ 8648687 (-) True AMCG00018344
TU145067 lncRNA upstream 197108 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 392244 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 731171 9200800 ~ 9215817 (-) True G115949
AMCG00018331 mRNA downstream 14375 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018328 mRNA downstream 40417 8409902 ~ 8422902 (-) True AMCG00018328
AMCG00018330 mRNA downstream 72179 8363373 ~ 8391140 (-) True AMCG00018330
AMCG00018326 mRNA downstream 103163 8343130 ~ 8360156 (-) True AMCG00018326
AMCG00018323 mRNA downstream 323073 8123318 ~ 8140246 (-) True AMCG00018323
AMCG00018334 mRNA upstream 49974 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018343 mRNA upstream 127464 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018341 mRNA upstream 156248 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018344 mRNA upstream 172267 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018339 mRNA upstream 197419 8667048 ~ 8676808 (-) True AMCG00018339
TU144767 other downstream 689427 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1820047 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1839706 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2512264 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3096565 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 770183 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1449417 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1659931 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1837961 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1865572 10335201 ~ 10342089 (-) True G116306

Expression Profile