RNA id: AMCG00018343


Basic Information

Item Value
RNA id AMCG00018343
length 1099
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00018343
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8597093 ~ 8602734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAATCTGCCATCTGATTGGCTAAGAGCCGTCCGTAAACGCAGTGTCGTAATCGCCAGCCGCCCAATAGGAGCCGAGCTCGGCCTGCGCTGTGATGGTTTGGTTTTGGAGACGaCTCTGGAAGTTCCCTTGAAATCTAGCACTACAATGGGGGAACGAAACTTCGATTCTCTGAAGGAAGAGATGGAGTACTGGATGGACCAGGCTGAGAAGTACAAACAGAGTGCCAGCGAAGCAcaggaggagctgcaggagtTCCAGCAGATGAGCCGTGATTATGAGGCGGAGCTGGAAGCGGAGTTGAAGCAGTGCGAGGCTCGTAACCGTGAGCTGCTGGCCAATAATAATCGGCTGCGTATGGAACTGGAGAACTACAAGGAGAAATTTGAGGCCCAGCACTCGGAGGCTTTCAGACAGATCTCCACACTAGAGGGCGATCTTGCAGAGACCACGGCCATCAGAGATCAGCTGCAGAAGTACATCAGGGAGCTGGAGCAAGCCAATGACGACCTGGAGAGAGCAAAGAgGGCCACCATCATGTCCCTGGAGGATTTTGAGCAGCGCATGAACCATGTGATCGAGAGGAACGCTTTCCTGGAGAGTGAGCTGGACGAGAAGGAGAACCTGCTGGAGTCCGTGCAGAGACTGAAGGACGAAGCCAGGGATCTGCGTCAGGAGCTGGCTGTCCAGCAGAAGCAGGAGCGGAAGCCGTCTCTGAGCATGCCCAAGGACGGGGAGAAGAGCGATTCCCCTTCGCGGCCCCCCTCGGCCCTCCCCCCGCTGCCTTCCACCCCAGGAGGGCCACGCACTCCCGGCAGCTCCTTCACCACCCCACCAGCCTCCTACCGCCGTGGTGATGGGCTCACCGGCACTCCCCTCACCACCTCAGCCCGGATATCTGCACTCAACATCGTCGGGGAGCTGCTCAGGAAAGTGGGGAACCTGGAGGCGAAGCTGGCCTCCTGTCGAGATTTTGTGTACGATCAGTCTCCCGGCCGCTCTGCCCTCGCGTCCTGCACCGGGACGGCTGCCCCCTCCAGAGAGGGCCCTGAGAACCATCCTACCAACAGCAATCTGCAACTGTTCGACAAAGGGTGA

Function

GO: NA

KEGG:

id description
K16738 NDE1, NUDE; nuclear distribution protein NudE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145037 lncRNA downstream 77890 8517334 ~ 8519203 (-) True G115807
TU144949 lncRNA downstream 163523 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 728467 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 754385 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 854346 7742541 ~ 7742747 (-) True G115580
TU145083 lncRNA upstream 39612 8642346 ~ 8648687 (-) True AMCG00018344
TU145067 lncRNA upstream 64003 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 259139 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 598066 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 878176 9480910 ~ 9482152 (-) True G116058
AMCG00018334 mRNA downstream 56054 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018329 mRNA downstream 127464 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018331 mRNA downstream 148149 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018328 mRNA downstream 174191 8409902 ~ 8422902 (-) True AMCG00018328
AMCG00018330 mRNA downstream 205953 8363373 ~ 8391140 (-) True AMCG00018330
AMCG00018341 mRNA upstream 23143 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018344 mRNA upstream 39162 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018339 mRNA upstream 64314 8667048 ~ 8676808 (-) True AMCG00018339
AMCG00018342 mRNA upstream 75130 8677864 ~ 8684648 (-) True AMCG00018342
AMCG00018340 mRNA upstream 84975 8687709 ~ 8688230 (-) True AMCG00018340
TU144767 other downstream 823201 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1953821 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1973480 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2646038 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3230339 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 637078 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1316312 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1526826 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1704856 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1732467 10335201 ~ 10342089 (-) True G116306

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1369672 False 1007 TUCP 0.52 6 NC_048577.1 70605137 ~ 70618741 (+)