RNA id: TU145083


Basic Information

Item Value
RNA id TU145083
length 1621
lncRNA type sense_over
GC content 0.38
exon number 4
gene id AMCG00018344
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8641896 ~ 8648807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCGCTGGAGCGGCGTTTTCCCGGGAGATCCGCCGGCGCCGTGACGCGCAAACTGCAGCTGGACCAGACCGCCGCCACCAGCGTCTTCTGCACAGGGAGAGGAGCTCAGCTCGCTCGGACCCTGGGCTCTGGTGGGATACAGGGATGAGTTTTCTTGAGGGCAAGGAGGACATCCTGCAAGACTGGAGGGAGAAATTCCTGAACACCTACAAGACTGGACTCATGTACTGGCCGTTTGTTCAGTGTTGGCGTTAATGAGGAAGAATATGAAGACACAGCTGGAGAAATTGGGACAACATGAATCACGTCAGATGGGCTCAGGTTTACCAGCAGAAGGATGTTACATACTCTTGTGCTAAGGTTTTTTAtgatattataattgtattatatattataagtaTACAGTATGTTCATATCAGGTGCAAATTTGCAGAATGTCAACCATTGGTATGTAATTCACTCCACTATACTAACTGTAATtctgaattaattgaattgtatttgtgtgttataTATGTAAAAGCAAGAAAGGCACAGCACAAACTGGATTGTTAGTCTTCCTCATTTGAATAGGCTGTTGTTTAATCGGCCCAGTATTAAGGTTTAAAAGTAAGTATCAATCTGTGCGGACAATAATCCTCTTAATCCTAATTATTTTAGGACTGTGCGTAATTGGGATCATTGTTCAACATACAACTAAAAATAGAGCAGCAGAGTAGACAGATTATTGAGGAAGGTGAAGCTTAGCTGCACTGAGTTGGTATAAATGTAGTATAAAGTATGAAGACAAATGACCAAGTCAATGGCACCTGGAAAAGTGCAAGATTTGCAAAGTGtaagcaaacaaaaagctgtactgtttgcagaaaaaaaaaatctgttacaaCAATTTTTTCTATTAGTAACTCATTGGAAAATAAAGTTAGGCTTACTTTGGCTTCACATATCAAATCTGTACTTcacggtttaatttattgttagaagccactttataatatttattcatCAAAACCCGACAGGGTACAACTTTGTCATTTGCTTTTTGATTTGGTGCTTTGTTTGAATATTCTTGAAGTTAATAAAAGTCTAGTGGTAGCTAACCAGTGACTgacagtatataaaaatatatgtgtttttatttgtattgttttaagatGACCAGTTTGGGGGGTTGGAAATAAGTACATACTTTCacaatctgtatttaaatgtgattttttacTTTGTAATTGAATTTGAAGCAACATATCATTCCCTAACACTGATGCATTAGCCtcagatttgtgtatttttgtttatggaaatgtaatgaaatgtaggCATGTATGGAAACTCAAAGCCCAAGGAAAACTGAGACtaattagttttgatttaaattctCTAAATTGTTGCTGTTTAATTGCTGTTTAATTCCCCATTTGATGTATGTTTCACCTCTTGGGGCTGTGATACTAAAACCGCTGTTGAACTGAAACGCACAAATCCCCTACCACAGTTGTACTACCTAAATAATAggcatacattacattttcattgtgaaCTACAGTCTTTAGCTCTGAGAACCCATTGGACATATATCCTGAAGGTAGTGGGAATGAAGAATGTCTggttcaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145037 lncRNA downstream 123143 8517334 ~ 8519203 (-) True G115807
TU144949 lncRNA downstream 208776 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 773720 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 799638 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 899599 7742541 ~ 7742747 (-) True G115580
TU145067 lncRNA upstream 18050 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 213186 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 552113 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 832223 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 878805 9527492 ~ 9527736 (-) True G116065
AMCG00018341 mRNA downstream 10758 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018343 mRNA downstream 39612 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018334 mRNA downstream 101307 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018329 mRNA downstream 172717 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018331 mRNA downstream 193402 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018339 mRNA upstream 18361 8667048 ~ 8676808 (-) True AMCG00018339
AMCG00018342 mRNA upstream 29177 8677864 ~ 8684648 (-) True AMCG00018342
AMCG00018340 mRNA upstream 39022 8687709 ~ 8688230 (-) True AMCG00018340
AMCG00018347 mRNA upstream 44672 8693359 ~ 8698933 (-) True AMCG00018347
AMCG00018346 mRNA upstream 51724 8700411 ~ 8717402 (-) True AMCG00018346
TU144767 other downstream 868454 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1999074 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2018733 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2691291 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3275592 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 591125 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1270359 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1480873 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1658903 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1686514 10335201 ~ 10342089 (-) True G116306

Expression Profile