RNA id: AMCG00018347


Basic Information

Item Value
RNA id AMCG00018347
length 2086
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00018347
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8693359 ~ 8698933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGCGCATGCTCGCAACCGCTGGGAGACACGTGTGGAGGGAGACAGCATGGCGGCGGAACAGGCGGCGGACTTCGAGCTGGACAGAGCCCAGgtgAAGAAGGCAGTACAGGCCCTGCAAGCCTTCCTGAAGAGCTCCTCCACTTCAGAATCGCTCCTCCTCAATGACAGCAAGCACATCTCCCTGCTCTTCACCCTCTGGAAGATCTCCAAGACCGAGCAGACCATCCGGATCCCCTTGCCTCATGGCCTACGTTCGGACAACGGGGACGTCTGTCTCTTTGTCAAGGACGAGCCCAACATGACCACCGATCAGACGGAGAGGTTCTACAGGAAATTGCTCACTGAGAAAGGAGTGAAGGGCATCACACAGATCATCCCTTTCAACATCCTAAAGAAGGAATACAAGCCCTTTGAAGCCAAGAGGAGGCTGCTGGGAAACTTCGACCTCTTCCTGTCCGACTCTCGCATTCGCCGGCTCCTGCCCTCTCACATCGGGAAGCACTTCTACCTGAGCAAGAAGGCTCCTCTCTCTGTGAACCTGCAGGCCAAGCAGCTGGCCCGAGACCTGGAGCGCCTCATCCAGGGCACCACTCTGAGCATCTCCAACAAGGGCTCCTGCTGCATGGCTCGCGTGGCGCACTCCGGGATGTCTGTGGACGAGGTTGTGGAGAACATCTCTGCGGCCGTCAGCACCATAGCGGAGAAACTGCCCGAGAAAGGAAAGGGAATCAAAATCATCCACCTGAAGAGCCAGACTTCGGTGGCTCTGCCCATCTACACTTCCAGCCTGAAACGCCTGTCGCTGCAAGCCAGTGATGTGGGGAGCTCCAGTCCACAGAAAATGAAGAAGGTAGGCAAGCAGAAGGGCAAAAAGGGAAAGGTTGCAAAGGCAGAGCCTGGACAGGAAGTGGAGGAGGTTCCACAGTTGGTTACTATACAAACGCCCTCCAAGAAGGCCAAGCTTCAGACCCCAGCAAAGAAAGCATTTGAGAGTGCACCAAAGACTCCAGTTAGAAATAAGAGTGCCCGGTTGTCTGCAGGGGCCCCTCCCGAGACCCCCAAGGAGGGCAGGGTGCTGAGGACACCAGGCAAGAAAGCGAAAACCGTGAAGACTCCAAAGAAAGCTCTGGCAGAGGAGGCAACAACTGTCAAGACACCCGCGAGGAAAAAGAAGGGAGCCCTGGCAAAAACCACACTGGCCAAGTCCGCCAAGAAAGCACCCAAAACTCCTGCGCAGAGACTGAAGAGAAAAATCCCCCAGTCGTGTTAATATTACCGACAGGCTTCCCATGAACTCCTAACCCAGCTGGGATAAGGGCTGAGGAAGgaggttttaaaaaatgcaaacctcTGTACACAAGCAACCTCCCCTCTTGCATTTAGCAACATGATGATTTGACAGGCAAAGCACAGGAGAGCAGGGCCGTGTGCTTTAGAAATTGTAAAGCAGGGGACGGCACCTGAAATATGCAGGACTCGAAAGAAATAAACCCTTTTATATATCCAAGATTCTTCATTCTTGCATAAACGATACGGTAATGTTTTAGTAACAGTTAAGCCTGatgtattcttgtttttgtacatgACTAGTTTGAGTTCCTATAGCAACTGAAAATGTGCTCTGCTCTAGGAAGGTGTTTAGATAAGAGTTATGTACCGGTCTACtaatgcactgttaactgtggctGGGAAGGTTGTGCAGTTAGAAACCTTCATAGGCAGAGCTGATACCATCTCTCACTAGGCAGTACCAGCTTTGATTCAGGATTTGACTAACATTTCTACTTGTTTAACCCTGCTCTGGAACCATGAAAAAAGTGACATTGACAGtaccattggggtggggtcacagagaccccatggtaccacagcagggttaaggagaaaaaaaagctatCCATTGAAAGatgcaaataaatgttgtcCATTTAACTATTTGTTAGTTTCCTGTTCTGTAAAATccaagttgtaaaatgtattttatattgcagaAGCATGGACTCCCTCTAACTTGTTAGATTGGAATGTGCTTGTGCAAGAAATATACTTTAATGTGCAGTAGTCGATCGTAAATTATTTTGGC

Function

GO: NA

KEGG:

id description
K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145067 lncRNA downstream 20508 8666737 ~ 8672851 (-) False AMCG00018339
TU145083 lncRNA downstream 44672 8642346 ~ 8648687 (-) True AMCG00018344
TU145037 lncRNA downstream 174156 8517334 ~ 8519203 (-) True G115807
TU144949 lncRNA downstream 259789 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 824733 7860316 ~ 7868626 (-) True G115599
TU145110 lncRNA upstream 162940 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 501867 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 781977 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 828559 9527492 ~ 9527736 (-) True G116065
TU145440 lncRNA upstream 1075373 9774306 ~ 9777349 (-) True AMCG00018390
AMCG00018340 mRNA downstream 5129 8687709 ~ 8688230 (-) True AMCG00018340
AMCG00018342 mRNA downstream 8711 8677864 ~ 8684648 (-) True AMCG00018342
AMCG00018339 mRNA downstream 16551 8667048 ~ 8676808 (-) True AMCG00018339
AMCG00018344 mRNA downstream 44552 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018341 mRNA downstream 61771 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018346 mRNA upstream 1478 8700411 ~ 8717402 (-) True AMCG00018346
AMCG00018353 mRNA upstream 125709 8824642 ~ 8905411 (-) True AMCG00018353
AMCG00018352 mRNA upstream 210814 8909747 ~ 8916027 (-) True AMCG00018352
AMCG00018362 mRNA upstream 491831 9190764 ~ 9192941 (-) True AMCG00018362
AMCG00018363 mRNA upstream 495105 9194038 ~ 9199468 (-) True AMCG00018363
TU144767 other downstream 919467 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2050087 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2069746 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2742304 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3326605 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 540879 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1220113 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1430627 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1608657 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1636268 10335201 ~ 10342089 (-) True G116306

Expression Profile