RNA id: TU145352


Basic Information

Item Value
RNA id TU145352
length 245
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G116065
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9527492 ~ 9527736 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgatgttcagactgtacaatgcgctagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaacgtcctactgagagactgaggaactgaacctgttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgac

Function

GO: NA

KEGG:

id description
ko05012 Parkinson disease
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145342 lncRNA downstream 45340 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 311675 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 665115 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 854641 8666737 ~ 8672851 (-) False AMCG00018339
TU145083 lncRNA downstream 878805 8642346 ~ 8648687 (-) True AMCG00018344
TU145440 lncRNA upstream 246570 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 256694 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 615689 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 635542 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 641512 10169248 ~ 10169622 (-) True G116256
AMCG00018375 mRNA downstream 1437 9523495 ~ 9526055 (-) True AMCG00018375
AMCG00018379 mRNA downstream 34094 9492227 ~ 9493398 (-) True AMCG00018379
AMCG00018378 mRNA downstream 37480 9488930 ~ 9490012 (-) True AMCG00018378
AMCG00018370 mRNA downstream 56909 9447484 ~ 9470583 (-) True AMCG00018370
AMCG00018367 mRNA downstream 147332 9360300 ~ 9380160 (-) True AMCG00018367
AMCG00018377 mRNA upstream 3102 9530838 ~ 9543701 (-) True AMCG00018377
AMCG00018376 mRNA upstream 38643 9566379 ~ 9584285 (-) True AMCG00018376
AMCG00018382 mRNA upstream 59662 9587398 ~ 9595630 (-) True AMCG00018382
AMCG00018381 mRNA upstream 85246 9612982 ~ 9675680 (-) True AMCG00018381
AMCG00018393 mRNA upstream 185582 9713318 ~ 9722901 (-) True AMCG00018393
TU145207 other downstream 269290 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1753600 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2884220 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2903879 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3576437 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 391310 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 601824 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 779854 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 807465 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 832393 10360129 ~ 10385216 (-) True G116307

Expression Profile