AMCG00018378


Basic Information

Item Value
gene id AMCG00018378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9488930 ~ 9490012 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018378
GGATTTTCAttgcttaatttatttccaaagcCGACGAAACCAAACCCTATCGCCATGGTTGAATGGACAGCTGCCGAGCGTGCCGCCATCACTGCTATCTGGGGCAAAATTAAAATCGATGAAATCGGACCCCAGGCCCTGGCCAGGCTCCTGATCGTGTACCCCTGGACTCAGCGCTATTTCGGCAGCTTTGGAAACCTGTCGAGCTCCGCTGCCATCCTCGGGAACGCCAAGGTCGCCAACCACGGCAAGGTCGTCCTCGGAGGGCTGGACAGGGCTGTGAAGAACCTGGACAACATCAAGGACAGCTTCTCCGCCCTCAGCGTGCTGCACTCCGAGAAACTGCACGTTGACCCCGATAACTTCAGGCTCCTGGGTGACATCCTCACCATCGTCTTGGCTGCCCAGTTGGGATCTTTCTTCACCGTCGAGTACCAGGCCACCTGGCACAAGTTCCTGGATGTTGTCATCAGCGCTCTCCGCAGACAGTACCATTAGAGCCCCCCAATGCAGCCGCCGTGCCCCTCTATCCTCCACGGCACAGATGCACAGAAGCGATCATCAAACATTTACTCTGTGTGATTACTACGGGCTGAATgtctgagaaaaaaacaataaatacatttaaaagcattgtaTGAAAACTATGTTTGTGATTCTTTTACTTTATCCTGGgtaaatgcatgaataaaagGTGAACATTATGGTATGTATGAATGAaatcaaa

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018378 True 727 mRNA 0.50 3 9488930 9490012

Neighbor

gene id symbol gene type direction distance location
AMCG00018370 nprl3,LOC106601082,LOC106607369 coding downstream 18347 9447484 ~ 9470583 (-)
AMCG00018367 NA coding downstream 108770 9360300 ~ 9380160 (-)
AMCG00018361 cdip1,LOC100712532,LOC103374307 coding downstream 271392 9207537 ~ 9217538 (-)
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding downstream 289462 9194038 ~ 9199468 (-)
AMCG00018362 NA coding downstream 295989 9190764 ~ 9192941 (-)
AMCG00018379 NA coding upstream 2215 9492227 ~ 9493398 (-)
AMCG00018375 NA coding upstream 33483 9523495 ~ 9526055 (-)
AMCG00018377 luc7l coding upstream 40826 9530838 ~ 9543701 (-)
AMCG00018376 NA coding upstream 76367 9566379 ~ 9584285 (-)
AMCG00018382 NA coding upstream 97386 9587398 ~ 9595630 (-)
G116058 NA non-coding downstream 6778 9480910 ~ 9482152 (-)
G115949 NA non-coding downstream 273113 9200800 ~ 9215817 (-)
G115874 NA non-coding downstream 626553 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 969727 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 1055360 8430126 ~ 8433570 (-)
G116065 NA non-coding upstream 37480 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 294418 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 653413 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 673266 10163278 ~ 10163522 (-)
G116256 NA non-coding upstream 679236 10169248 ~ 10169622 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 230728 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 812122 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 840123 8641896 ~ 8648807 (-)
G115581 NA other downstream 1715038 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2836157 6610633 ~ 6652773 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 284294 9774306 ~ 9779545 (-)
G116165 NA other upstream 429034 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 630587 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 813042 10303054 ~ 10332982 (-)
G116306 NA other upstream 845189 10335201 ~ 10342089 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005323 hbbe2 coding NC_007123.7 CM002896.2 20349865 ~ 20350629 (-)