RNA id: AMCG00018328


Basic Information

Item Value
RNA id AMCG00018328
length 1398
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00018328
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8409902 ~ 8422902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCTCCTGTCCAGATTGTCCAATTTCCTGCTGTGCCGGTGGACCTGCCAGGCATGTTGGCAGTCGTGCTTGGAGTGTAGTTGCTGTCAGACGAGCGATGAAGAGGTGGAGATCCTGGGGCCCTTCCCTGCTCAAACCCCATCCTGGCTTGTCAACGACTGTAATGAAGACAAAGAAGGCGATTCTGACGTGGCAGCCAGTGAGCCTCCCGCCACGCCTCAGGACAGCTCCCCTGACCACCGCCGCTCCAGTTCTGACACGTCTCGCTCCACCTACAGCCTCGCCCGACGACTGTCCAGTCTGGAGGTGCGGAGGCCCAGTTCCCCCCTGCTTGACATCAAGCCCATTGAGTTCTGGGCCATCGGCTCCAAGAAAGAGGCGGTGCAGCCCTCAGTGCTGAGGAAGCCCTATGTGGCATCAGACGATTACTTCCGCAAGTTTGAGCCACGGCTATACTCTGTGGACTCCAGCAGTGACGATGTGGACTCCCTGACGGACGAGGAGATCCTGTCTCGCTATCAGCTGGGCATGCTGCACTTCAGCACCCAGTATGACCTCATCCACAACCACCTGAGCGTCAGGGTCATCGAGGCCCGAGACCTGCCCCCGCCCCTGTCCTGTGATGGTGCCCGGCAGGACATGGCACACTCCAACCCCTATGTGAAGATGAGCCTGCTGCCCGATCACAAGAACTCACGGCAGACCGGTGTCAAGCGCAAGACACAGAACCCTGTCTTCGAGGAGCGCTTCACTTTTGACCTCCCCTTCCTGGAGACCCAGCGCCGCACCCTGCTGCTCTCTGTCGTTGACTTTGACAAGTTCTCACGCCACTGCGTCATTGGCAAGGTGGCCATGCCTCTGAGTGAAGTGGATTTGGTCAAGGGTGGGCACTGGTGGAAGGCTCTGGTACCCAGCGCCCAGAACGAGGTGGAACTGGGTGAATTGCTCCTGTCCCTGAACTACTTGCCTAGTGCGGGAAGACTCAACGTGGACATCATCCGTGCCAAACAGCTGCTGCAGACTGACATGAGTCAGGGCTCAGACCCCTTTGTGAAGGTGCAGCTGGTTACAGGTCTGAAGCTGGTGAAGACCAAAAAGACTTCATGCATGAAGGGAACCATTGACCCTTTCTACAATGAGTCCTTCAGCTTCCGGGTTACGCAGGAGGACTTGCATGATGTCAGCCTGGTCTTCACAGTGTACGGCCACAACATGAAGAGCAGCAACGACTTTGTGGGGCGCATCGTGATTGGCCAGTTCTCGACGGGCCCCCCCGAGACCAGCCACTGGCGGCGCCTCCTCGTCTCTCAGCGTAACCCTGTGGAGCAGTGGCACAGCTTGAGATCCCGCGCTGAGTGTGACCGTGTCTCTCCTGCCTCCCTGGAGGTCACGTGA

Function

GO: NA

KEGG:

id description
K19915 SYT17; synaptotagmin-17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144791 lncRNA downstream 541276 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 567194 7842337 ~ 7842708 (-) True G115596
TU144763 lncRNA downstream 667155 7742541 ~ 7742747 (-) True G115580
TU144762 lncRNA downstream 667692 7741974 ~ 7742210 (-) True G115579
TU144760 lncRNA downstream 675518 7734097 ~ 7734384 (-) True G115577
TU144949 lncRNA upstream 7224 8430126 ~ 8433570 (-) True G115732
TU145037 lncRNA upstream 94432 8517334 ~ 8519203 (-) True G115807
TU145083 lncRNA upstream 219444 8642346 ~ 8648687 (-) True AMCG00018344
TU145067 lncRNA upstream 243835 8666737 ~ 8672851 (-) False AMCG00018339
TU145110 lncRNA upstream 438971 8861873 ~ 8862377 (-) True G115874
AMCG00018330 mRNA downstream 18762 8363373 ~ 8391140 (-) True AMCG00018330
AMCG00018326 mRNA downstream 49746 8343130 ~ 8360156 (-) True AMCG00018326
AMCG00018323 mRNA downstream 269656 8123318 ~ 8140246 (-) True AMCG00018323
AMCG00018322 mRNA downstream 287706 8119988 ~ 8122196 (-) True AMCG00018322
AMCG00018316 mRNA downstream 328647 8079235 ~ 8081255 (-) True AMCG00018316
AMCG00018331 mRNA upstream 20293 8443195 ~ 8448944 (-) True AMCG00018331
AMCG00018329 mRNA upstream 40417 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018334 mRNA upstream 96701 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018343 mRNA upstream 174191 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018341 mRNA upstream 202975 8625877 ~ 8631588 (-) True AMCG00018341
TU144767 other downstream 636010 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 1766630 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1786289 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2458847 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3043148 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 816910 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1496144 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1706658 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1884688 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1912299 10335201 ~ 10342089 (-) True G116306

Expression Profile