AMCG00018462 (grid2ip,LOC108274076,LOC108432200,LOC106589205)


Basic Information

Item Value
gene id AMCG00018462
gene name grid2ip,LOC108274076,LOC108432200,LOC106589205
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11488147 ~ 11514342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018462
AGCAAAACAGTCCTGTGGAAGTTATCTggattgtctttttttgttattgtggtGCGTCAGAACGCATCTCCACCTGAGCGAATCTCAACTGCAAAGTTTCTCTTCGTGCCCACTGAGAGGATCTTCATCCCGAAGAAGCATCGGCAGCGCTTTGACGAGGTGGTGTCCCAGAGCCTCATCAATCGCATCTGCCGGGGCAAGAGCCTAACCGAGCCCAGCCAGAGCCGCCTGCGCCGCAGCCGCTCCGAGGACCACCACGAGCGCCTGCTGGTTTCCACCCGGGCTAGCTCTGTGCCCAGGTCCGGGGAGGAAAGTGCTGCAGCCGCTGCCCCCAGCAAGGGCCTGAGGAAGACCACCTCCCTCATCGCCAGCCACTCCGGGGCCAGCGCCAACCGCAGGACGGTCCGTGTTTACAAAGGCAACAAGAGTTTTGGATTCACCCTCCGTGGTCATGCTCCGGTGTGGATCGACTCCGTTATTCCAGGGAGTCCTGCAGAAAAGGCGGGTCTCAAACCTGGTGACCGCATCCTGTTTCTCAATGGGCTGGACATGAGGAGCTGCTCCCATGAGAAGGTGGTGTCCATGCTGCAGGGTAGCGGGGCCATGCCCACTCTGGTGGTCGAAGACGGACCGGCCAACTTCACACTGGAGATCCTGCCCCCCAGCATCAGGGTGCACGGCCGCACCTTCAGTCAGCAGCTGGACCACCTGCTCACCCACCAGGAGCGATACACCATCTGCAAGGCCCTGGAGACCTTCTTCCAGCACAGGAACGTGGACACTCTGATTGTGGACGTGTTCCCCGTGCTGGACACTCCAGCCAAGCAGGTGATCTGGCAGTTCATCTACCAGCTGCTGACCTATGAGGAGCAGGAGCACTGCCAGCACAAGATCGCTCGCTTCCTGGGGTACAAGACAGCCACAGTGGCGGCGGAGCCAGAGCCCGGGCCGGAGACGCACCGCCGCAGTAGCTCCATGAGGGTGACGTCCACAAGCTACCGCAGCAGCGTGCGTGGTAGGAGTGCCGACGACTGCATCCCAGGGACTCACAGCGACTCGGGGGAGGTGGGGATGAGGCTGACCCCTGGAGAGAGGCAATCCGGAGACGGGACATCCCTCCCAGAGACCCCAAATCTCAAAAACATGTCTGCAGTGTATGCAGAACTGGAAAGCACCTACTCCATCAAGCCCCTTCTGAAGCCCCTCCCGAACCGCCTGTCCCCAGGGCCGGACAGTCTGGCTGAGGCCACCCCAGCTCCGCAGCACTCCCCCTCCACACAGCTGAGTGCAGGGACCCGAAAGATCGGACTGTCCCTGTCCTGGAAGGAGCCCCTACCCAGCCCCCAGTGCCGCTGCTACCCCCACCCCATCCCCTCCCCCGGCAGTGCAGAGTCCAACCCCTACGTCAGCCTGGACAGCCCTCCGCCCTCGCCACCCCTGCAGTCCCACAACTACCCCCACAGTCCGCTCTCCCGACGCAAGAAACTGTTTACCTTCTCACGGCCTCCCCGCAGCCGGGACACCGACAAGTTCCTGGACGCCCTGAGCGAGCAGCTGGGCCACCGTGTCACCATCGTGGACGACTTCCTGTCCCCCGAGAACGACTACGAGGAGGTCAGCACCGCGCCCCCGGGAAAGGACAGACAAGCAGATAGAGAGaataagacaaaaacagacaacataGAGACAGACAAAAAGTTCACACAgATGATTTTCCAGGACGAGCAGGAGGGTGGGTTCCTGCCCCACGAGCTGAGCAGTGACTACCACAGCAGTAGCGAGGACGGCAGCTCCCTCACCTACTCGTCTGGTTCCGACCACATCCCCCCGCCCCCGCAGACGCCCCCACCGCCGCCGCCCATGCAGTTCAACGACTCCCCGCCCGTCACCCTGACCCCCGAGCCTCACCCAAACCTTGCACCTCCACACCCACCCCACCAGTCTCCCCAGCCTAGCCAGCCCCATGTGAATCACCCGCTTCACCCAGTGCATCAGCCCCACCAGAGCCCACTCCCATCCCACCACCCTGCCCAGCCCCACAAAGTGCCCCCtccgccaccaccaccacctccaccgCCCCCGCCCTGCGGCCCTCCGCCCCTGCCCCGGCCCTCTCACCGCCGCTCTGACTCCAGCCACATGAGTGTGAAGCGGCTGCGCTGGGAGCAGGTGGAGAACTCGGAGGGCACCATTTGGGGCCAGCTGGGAGAAGACTCGGACTATGACAAGCTGAGCGACATGGTGAAATACCTGGACCTGGAGCTGCACTTCGGGACACAGAAGAACACCAAGCCCGCCTTCATGCCCgattcctttaaaaagaaagacgTGGTGGAGATTCTCTCCCGCAAAAAGGCCTACAACACATCCATCCTTATCGCCCACCTGAAGCTGTCCCCTGTGGAGCTGCGCCAGGTGCTGATGACCATGACCAACGAGCGGCTGGAGCCCTCGCACATCAAGCAGCTGCTGCTCTATGCCCCCGACGAAGAGGAGGTCAAGCAGTACCATCAGTTCACCCAGGAGCCCAGCAAGCTCAGTGAGCCAGACCAGTTCGTCCTGCAGATGCTGTCGGTGCCGGAATACAAGACGCGACTGCGCAGCCTCCACTTCAAGACCACCCTACAGGAAAAGACAGAGGAGATGAAGGCCGGCTACGAGTGCATCTACAAGGCCTCCATGGAGCTGAAGAACAGCAAGAAACTGGCAAAGATCCTTGAGtttgtgCTGGCAATGGGGAATTACCTGAACAATGGCCAGCCCAAGACAAGTAAACCCACcggatttaaaatcaatttcctCACGGAGCTAAGTACCACCAAAACTGTGGATGGGAAGTCAACGTTCCTGCACATTCTTGCCAAATCTCTGGGCCAACACTTCCCTGAACTTCTGGGTTTTGCCAAGGACCTGACTACAGTGCCCCTAGCTGCCAAAGTCAATCAAAGAACAATCACCACGGACCTAAACGACCTTCACAGCACCATCCAGGACATCCGTGCCGCCTGCCAGAAAATGCCAGCCACTGCTGAGGACAGGTTTGCGGCCGTGATGAGTGGGGCTCGATGTCAGGGTTATCTGGAGAACACGCACCCTGCGATTCAGTCTTTGGAGTCACTGCAGCAGCGCGCCATGGATGAGTTCAGCAAGGTGGCGTCGTTCTTCGGAGAGGACAGCAAGGCCACCTCCACTGAGGCCTTCTTTGGCATCTTCGCAGAGTTCATCGCCAAGTTTGAGAGAGCGTTCACAGAGACTCGGGCCACCGAGAACCCCAGGAGCCCCCGCATGGCCTCCCCTCTGGCCTGGTGATGAGGCTGCAGACAGTGTGCCAAACAGAGCACTGCTCTCACCCCTGCTATGAAGGAACTCCTTTTGCcctaaagcaaaaaaaatagaCTGCAAATACTGCAaattggaaaggaaaaaaaacaaagaatgacaGAACAGACTGACTGATTTCAAATCTCtccatatattaaaatataggatattttatatttagttctagaaaaaagaggaaagtaacttaaatgtacatacaaacaaaaaccataGACCGCTACTATTTTAAGTGTTTACAATGCATTTGGGAATGACTCTGCCaagctgtgtttctgtgcttctGAGCTGCAGAATGGGAAACTCAAACAACTGCTGTGGATGATGTCGATGCTCCCAGCCCACCCCACCCCGTCACAGTGTCACTGAAGGGGAACACGTCTGAATCGTATGCATATGCAGTCCTCTTCCTTTCACTTCACCTTAGTTTGAAAACACTTACATTTCTATTTAGTCCTGCACCCCAGCTGGGTCTCAACAGGCAGACGGCCTCCAGGTCtcttaaaatgaatatgaaaaatCAACAAAGCAAACCCAGAGAGCTCTGCATCTATGATTGGATATTGATATAAATGAGGTGTAGACTTCAGTTTTTACGAGCTATACTTAATTACAATTCTTATTTGCAGAGAATATTCAAAGCAAAGGTTATAGACAGAGATACACATGGCCATCTAACACAAGGCAGTCTTGAAAATGTCCACCGGTCTCCCTTGTTTTCTGAAAGTGAAGATTATTAACCCGTAATATAGCTCTTACTGTAAGACTGCATTTTATTGTGGTGCTAGAGGACTGATCTGACTGCTTTATAAACTGCACACACTGCCAGGATGATTCCTTAGATTATTACAAAGCTGGTCAAATCAGAAATCCCTTCAAATCCACAGGCTATGACCCAGTGTGTTTTGCAACACCGGGTGACTGCAGCCAGGGCTGGTTTAGGTCACATTAGCTGGCTGGCACTGCAGCCTACCTTATAATGTGAACCTCGTTTTAAATCTGCCGTAGGCCTGTACAGTATCAGACAGTCTAACATTAGTATGAGactatttaaaagaaagaggacttttattttttgtaaactaCCAcgttgaatgtatttaaattaacctCAAATAAAGTATGATAAAGTATGATCTTTAGCTcctaattttttgtttgtttagatgaTATACTGAGTTGCTGCTtttttgtcctttaaaaaataaatgattggagTAGAAGAGCTGGGGAGCCCAATACAGTGCAAGAGCAGCAGAGCCTGTTACAATAGGAAATCACCCCGTGCACAAGATTTGATTAATATAAAGCAGGCTTTTAAAAAATTATCTTTTTTCAAAACAGTGTCACTGTGTCCTTAAATAGGAtatgaaagaaaacatattaGCCTGGGTAATTAACTGTTCCTCCCTCCAATGCAGTGTGGTCCCCTCAGTGTATGCAGCCACCTTtcctttataaaatgtgtttgttatgtgtatttatttcttatgcagtttttttattattattcagctcTCTTCCAGTCTTTTCAGTGGGATTATGTGCAGACCCACTACTGTATCGTTGGCATTTTAATTGTCCTGTGCCTGTCAAAGTGTGGCTCAGTTAATTAAGTAGGCCGATGTCACAGGAACAGTTTCATGTTGCCCGGAGTGAACATTAACCAGTTTGAATGAAGCAGGATATTTTATGTCAACACCGCCATGACAACAAGTTGAGCTTCTTGAAAGCAATGAATGTTTTTCAGTCTGTTTTCAGTCGCAGTTCTGATTATTATCTTAATAATAAACGTAAAGCTTATGTTATTAACAAATAGTTCAGAAGCTGTACATAACAATGAGCTACATACTGTACTGGACTATATGCGTCTCTGTTTAATTTGCTACCAGTCTCAACCAGTGTTACTTCTATGTCGATAATTAGACCACTGTTGTAAAAAGATCTGAAAATTAATCTCTGAGGAGGACgctgtatattatttattttgttctcgaaaaagcaaagtgttttatttatttatttctgtggtttacaaaagaagaaaaattcAGAGGAAGACTTTGATATTCAGAGTTGCTTCTGATTGTGATTTCTCTCGCCCTCTAATGACACACTTGGTTCTCTGCTCCAGTAGGGGTCAGTGCCGAGCTTAACCTTAGAGCAGACCGAGCAACAGCCTAAATCAGACTTCCCTCTCCATTCTATATGCTTGATGTGGCTGGTTCTGTAGGtgtgatttagtttttcttcttaataGTCACTAGTGTGTGGatttttgttctctttattCAGTACTAAACAATATAGACCTAGTGAtgagaaatatttatttctccctATTTGAGGGAGTCTGTGTTTAAATTTTAGCATCCTTTTTTACATGTTTCAGTAGATTTGTAAGTGTTCCACAACTGTCCAGTTCAGGATACTGTACAGCATGCAGATACACACCTGTGTATTCCCTTTAGTTTGCTCTGTGCCATGATCAATCCAGCCCTATTTATCCTGCTAGATGGCCCATTTCAAAGGCACATGGAGTTCAGACATACTGCCAGCTTTGGAAAGCAGAAGCATTAGGGGGCAAGAGCATATAAAATCACACTTCTGTTGCCACTTCCATAACTAAGAAGTATTTACTAATTACATAAACTGTGCATGCATGTACAATACATTAGGTCTGTAgactgttattaatattaatattaatgttactattattaaacctgtatgtatttatttacttatgcattgattttggtttgttttattgtttctcttttttttttttttt

Function

symbol description
grid2ip Predicted to act upstream of or within long-term synaptic depression. Predicted to be located in dendritic spine.

NR:

description
PREDICTED: delphilin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018462 True 6133 mRNA 0.50 22 11488147 11514342

Neighbor

gene id symbol gene type direction distance location
AMCG00018465 NA coding upstream 35673 11450500 ~ 11452474 (+)
AMCG00018463 e4f1,LOC107758096 coding upstream 51947 11427683 ~ 11436200 (+)
AMCG00018456 mlst8 coding upstream 79340 11401958 ~ 11408807 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding upstream 103591 11377899 ~ 11384556 (+)
AMCG00018450 LOC106606699 coding upstream 110752 11371544 ~ 11377395 (+)
AMCG00018464 NA coding downstream 1613 11515955 ~ 11526795 (+)
AMCG00018468 NA coding downstream 81579 11595921 ~ 11606352 (+)
AMCG00018467 NA coding downstream 105031 11619373 ~ 11638050 (+)
AMCG00018470 NA coding downstream 163420 11677762 ~ 11678127 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding downstream 241492 11755834 ~ 11817048 (+)
G116479 NA non-coding upstream 72409 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 76077 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 404358 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 508462 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 748972 10738286 ~ 10739175 (+)
G116546 NA non-coding downstream 214467 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 612108 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 624660 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 758247 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 764088 12278430 ~ 12278840 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 231982 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1195886 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1441624 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1475474 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1875229 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 451905 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 975125 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 988681 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1029203 12543545 ~ 12611879 (+)
G116832 NA other downstream 1739001 13253343 ~ 13255794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01563309_01595922 GRID2IP, GRID2IPB coding CI01000063 null 1563309 ~ 1595922 (+)