AMCG00018468


Basic Information

Item Value
gene id AMCG00018468
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11595921 ~ 11606352 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018468
ATGGCCACCCGAAAGGCTTTCACAGACTCCGACACGGCCGACGAAGCAGTTCGTACTACATGCGATGATGCCTCAGTCTGGTACTATGCCCGAGTGAGGGGCGTGAGTCACCTGCTGGATGCCTTCCTCCGACAGATGGCTTGCAACTGTCAGGACGAAAATCTCCTGcctaaaaaatactttgaagtTGACTTCCCGATGATCGTGGCGAGGAAGATCCACAATATCAAGACGAAACCTCCTTTGTCGAAACCCATTGTGGAAACCCACTCTACTGATGCCCTTCTGATTGatgGCCACAGTCTGGACTCGGACAGGTACTGCATCATCGGCGCAGATCTGCGGGACCTCCCAGGCCTGGAGGAGAAGCTCAAAGCCTTCCAGCTGAAGCCCGAGCTGCCGACGCTGTTAGTCTCCGAGTGTGTGCTGGTGTACATGACCCCAGAGCAGTCTGCCACCCTGGCACGGTGGGCCGCCAACACCTTCCCCACTGCCATGTTCATCAACTATGAGCAGGTGAATATGGCAGACCGTTTTGGACAGGTGATGATCGAGAACTTGCAGCGGAGGCAGTGTAATCTGGCTGGAGTGGAGGTGTGCCGATCCCTGGACTCACAGAAAGACCGGTTCCTGACCACTGGTTGGGAGCGTGCGGATGCTCTGGACATGATGGCGGTGTATAGCGCCCTTCCCCAAGACGACGTGGCGAGGATCGAGCAGCTTGAGTTCCTGGATGAGAGGGAGCTTCTGCAACAGCTACTGCAACACTACAGCATCTGTTGGGCCACCAAAGATCAGCTCAAACTGGgTCTGTctggtgtttcattttaaacaaccAAGGGGGGGAAATTGACAGTTTTTACATGTGTCCCAGATAAACCACTCAACATGCTCCTTCATGCCATAAAATCCTGCGCTTGCTAATAGACCAGGACAATCCAGCCTCCTGCATTGTGGCCACTTTTGTCCACTGTGGTCCTTCTCCAATAAAACACCAGGAAAACATGAATTTTactctgattttaattttggtttttAGGGTTTTTCGCCCCCAGAATGAGTGCTATAGTACTGCTGATCAGCTCATATGTTAAaagtattgtgtattttatataaaaagcatGACCGTGTTTCTCCCTACACTGAGGTTTGTCTTCAGATGTGGAGTCATTAAAGGTCAAATCCACACTtatacatacaccaatcagccataacatgatgaccacctgcctaatattgtgtaggtcccccttttgcagccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtgctctctggca

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K18203 LCMT1; [phosphatase 2A protein]-leucine-carboxy methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018468 True 1329 mRNA 0.51 10 11595921 11606352

Neighbor

gene id symbol gene type direction distance location
AMCG00018464 NA coding upstream 69126 11515955 ~ 11526795 (+)
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding upstream 81579 11488147 ~ 11514342 (+)
AMCG00018465 NA coding upstream 143447 11450500 ~ 11452474 (+)
AMCG00018463 e4f1,LOC107758096 coding upstream 159721 11427683 ~ 11436200 (+)
AMCG00018456 mlst8 coding upstream 187114 11401958 ~ 11408807 (+)
AMCG00018467 NA coding downstream 13021 11619373 ~ 11638050 (+)
AMCG00018470 NA coding downstream 71410 11677762 ~ 11678127 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding downstream 149482 11755834 ~ 11817048 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding downstream 249168 11855520 ~ 11900247 (+)
AMCG00018476 NA coding downstream 349877 11956229 ~ 11966330 (+)
G116479 NA non-coding upstream 180183 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 183851 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 512132 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 616236 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 856746 10738286 ~ 10739175 (+)
G116546 NA non-coding downstream 122457 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 520098 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 532650 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 666237 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 672078 12278430 ~ 12278840 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 339756 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1303660 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1549398 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1583248 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1983003 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 359895 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 883115 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 896671 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 937193 12543545 ~ 12611879 (+)
G116832 NA other downstream 1646991 13253343 ~ 13255794 (+)

Expression


Co-expression Network